CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

plastid 4
golgi 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21160.1	KRG91803	AT4G09570.1	19130088
AT3G21160.1	KRH34983	AT4G09570.1	19130088
AT3G21160.1	KRH34984	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58075	Soybean	extracellular	14.63	90.43
KRH19110	Soybean	cytosol	55.94	86.9
Bra018917.1-P	Field mustard	golgi, mitochondrion, plastid	64.72	67.02
CDY55669	Canola	golgi, mitochondrion, plastid	64.54	66.84
VIT_11s0052g00140.t01	Wine grape	golgi, mitochondrion	57.66	66.73
CDY22853	Canola	golgi, mitochondrion, plastid	64.37	66.67
AT1G51590.1	Thale cress	golgi, mitochondrion	63.86	66.25
CDY46554	Canola	golgi, mitochondrion	63.68	66.07
CDY52948	Canola	golgi, mitochondrion	63.17	65.77
GSMUA_Achr2P04510_001	Banana	golgi, mitochondrion	65.58	65.58
KRH47289	Soybean	endoplasmic reticulum	64.37	64.93
KRH44626	Soybean	mitochondrion	64.54	64.88
Zm00001d002388_P003	Maize	golgi, mitochondrion, plastid	61.96	63.72
Zm00001d026257_P003	Maize	golgi, mitochondrion	61.62	63.48
EES12812	Sorghum	golgi, mitochondrion, plastid	61.62	63.48
Os04t0606400-01	Rice	golgi	61.96	62.94
AT3G21160.1	Thale cress	golgi	61.62	62.59
GSMUA_Achr4P12680_001	Banana	golgi	49.57	62.47
Bra031256.1-P	Field mustard	golgi, mitochondrion, plastid	61.45	61.66
CDY50074	Canola	golgi, mitochondrion, plastid	61.1	61.63
CDY19581	Canola	golgi, mitochondrion, plastid	60.93	61.14
CDX82213	Canola	golgi, mitochondrion	58.86	60.96
Bra001816.1-P	Field mustard	golgi, mitochondrion	59.55	60.6
CDY32409	Canola	golgi, mitochondrion	58.35	60.43
HORVU2Hr1G100750.2	Barley	golgi, mitochondrion, plastid	61.45	59.6
TraesCS2A01G432100.2	Wheat	golgi, mitochondrion, plastid	61.45	59.6
TraesCS2B01G453500.2	Wheat	golgi, mitochondrion, plastid	61.1	59.27
TraesCS2D01G430000.2	Wheat	golgi	61.1	59.27
Zm00001d019006_P001	Maize	cytosol	21.86	56.7
Bra014291.1-P	Field mustard	mitochondrion	64.2	56.69
Zm00001d031739_P001	Maize	cytosol	11.36	55.0
Zm00001d025428_P002	Maize	cytosol	10.5	54.46
Zm00001d003736_P001	Maize	plastid	30.81	41.92
KRH57025	Soybean	extracellular	11.36	32.51
KRH21064	Soybean	endoplasmic reticulum	35.28	32.33
KRH11192	Soybean	endoplasmic reticulum	34.94	32.07
KRH03356	Soybean	endoplasmic reticulum, golgi	25.3	25.7
KRH34374	Soybean	endoplasmic reticulum, golgi, vacuole	23.92	22.46

Protein Annotations

KEGG:00510+3.2.1.113	KEGG:00513+3.2.1.113	Gene3D:1.50.10.10	EntrezGene:100816571	MapMan:18.1.1.6.3	InterPro:6hp_glycosidase-like_sf
EMBL:ACUP02010323	ncoils:Coil	EnsemblPlantsGene:GLYMA_17G058500	GO:GO:0000139	GO:GO:0003674	GO:GO:0003824
GO:GO:0004571	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005794	GO:GO:0006491	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016798	GO:GO:0019538
InterPro:Glyco_hydro_47	InterPro:IPR012341	UniProt:K7MK43	EnsemblPlants:KRH02771	ProteinID:KRH02771	ProteinID:KRH02771.1
PFAM:PF01532	PRINTS:PR00747	PANTHER:PTHR11742	PANTHER:PTHR11742:SF42	SUPFAM:SSF48225	InterPro:Seven-hairpin_glycosidases
TMHMM:TMhelix	UniParc:UPI000294C356	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:4445504..4452488

Molecular Weight (calculated)

66613.9 Da

IEP (calculated)

6.282

GRAVY (calculated)

-0.492

Length

581 amino acids

Sequence
(BLAST)

001: MGKKSSSSST SSTSSVWRYL QPRYYIKRPK RLALVLMICV SITWLFYDRK SLNTGHQDDI LKLKEEFTRL ENTVENIKGH MKDSTESIEN DEANKFTKDI
101: SVEEDPINIR RRDKVKDAML HAWTSYEKYA WGKDELKPQS MNGVDSFGGM GATLVDSLDT LFIMGLDAQF KRATEWVAES LHFHQNIEVS VFETTIRVLG
201: GLLSAYDLSG DKVFLEKAKD LADKLLPAWN TPSGIPYNRI NLAYGNTNNP TWARGNSILA DSGSEQLEFI ALSQRTNDPK YKEKAEKVIK ELYRTFPEDG
301: LLPIYINPLT GTKSSGAITF GAMGDSFYEY LLKAWILGNK TEVVTFYREM WEKSMKGLQS MIRRSTPSSF TYLIERLGNA DFDKMDELAC FVPGMLALGS
401: SNYGPGEAEK FLALGEELAW TCYNFYQLTP TKLAGENYYF RNGQDMSVGT SWNIQRPETI ESLFYLWRFT GNKTYQEWGW NIFQAFENNS RIETGYVGLK
501: DVNTGAKDNM MQSYFLSETL KYLYLLFSPP SVISLNEWVF NTEAHPLRIM TRSAHEESGD QEEVFPRHLH GRKEGRINYK K

Best Arabidopsis Sequence Match ( AT1G51590.1 )
(BLAST)

001: MARSRSISGY GIWKYLNPAY YLRRPRRLAL LFIVFVSVSM LVWDRINLAR EHEVEVFKLN EEVSRLEQML EELNGGVGNK PLKTLKDAPE DPVDKQRRQK
101: VKEAMIHAWS SYEKYAWGKD ELQPRTKDGT DSFGGLGATM VDSLDTLYIM GLDEQFQKAR EWVASSLDFD KDYDASMFET TIRVVGGLLS AYDLSGDKMF
201: LEKAKDIADR LLPAWNTPTG IPYNIINLRN GNAHNPSWAA GGDSILADSG TEQLEFIALS QRTGDPKYQQ KVEKVITELN KNFPADGLLP IYINPDNANP
301: SYSTTTFGAM GDSFYEYLLK VWVQGNKTSA VKPYRDMWEK SMKGLLSLVK KSTPSSFTYI CEKNGNNLID KMDELACFAP GMLALGASGY GPDEEKKFLS
401: LAGELAWTCY NFYQSTPTKL AGENYFFTAG QDMSVGTSWN ILRPETVESL FYLWRLTGNK TYQEWGWNIF QAFEKNSRVE SGYVGLKDVN TGAKDNKMQS
501: FFLAETLKYL YLLFSPSSVI SLDEWVFNTE AHPLKIVARN DPRKPTIALR QRKFGHQINV

Arabidopsis Description

MNS1Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C512]
SUBAcon: [mitochondrion,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.