CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi

Predictor Summary:

plastid 2
mitochondrion 4
golgi 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90725
CDY05064

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21160.1	CDX90725	AT4G09570.1	19130088
AT3G21160.1	CDY05064	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32409	Canola	golgi, mitochondrion	95.9	95.9
Bra001816.1-P	Field mustard	golgi, mitochondrion	95.54	93.87
CDY50074	Canola	golgi, mitochondrion, plastid	82.53	80.38
CDY19581	Canola	golgi, mitochondrion, plastid	81.82	79.27
CDY22853	Canola	golgi, mitochondrion, plastid	79.14	79.14
CDY55669	Canola	golgi, mitochondrion, plastid	78.79	78.79
AT3G21160.1	Thale cress	golgi	80.04	78.5
CDY46554	Canola	golgi, mitochondrion	76.47	76.61
CDY52948	Canola	golgi, mitochondrion	75.58	75.99
KRH58075	Soybean	extracellular	12.66	75.53
PGSC0003DMT400023755	Potato	cytosol	33.51	71.76
VIT_09s0054g00230.t01	Wine grape	cytosol	43.67	71.43
VIT_09s0054g00370.t01	Wine grape	golgi, mitochondrion	70.77	69.04
KRH47289	Soybean	endoplasmic reticulum	70.59	68.75
Solyc03g123900.2.1	Tomato	extracellular, nucleus	69.7	67.53
KRH44626	Soybean	mitochondrion	69.52	67.47
VIT_09s0054g00310.t01	Wine grape	cytosol	11.05	67.39
Zm00001d002388_P003	Maize	golgi, mitochondrion, plastid	67.56	67.08
EES12812	Sorghum	golgi, mitochondrion, plastid	67.2	66.84
Zm00001d026257_P003	Maize	golgi, mitochondrion	67.02	66.67
GSMUA_Achr2P04510_001	Banana	golgi, mitochondrion	68.27	65.92
Os04t0606400-01	Rice	golgi	66.49	65.21
Zm00001d031739_P001	Maize	cytosol	13.9	65.0
Solyc06g063260.2.1	Tomato	golgi, mitochondrion	65.42	64.96
GSMUA_Achr4P12680_001	Banana	golgi	53.12	64.64
Zm00001d025428_P002	Maize	cytosol	12.83	64.29
VIT_11s0052g00140.t01	Wine grape	golgi, mitochondrion	57.04	63.74
KRH19110	Soybean	cytosol	41.53	62.3
TraesCS2D01G430000.2	Wheat	golgi	65.78	61.6
HORVU2Hr1G100750.2	Barley	golgi, mitochondrion, plastid	65.6	61.44
TraesCS2A01G432100.2	Wheat	golgi, mitochondrion, plastid	65.42	61.27
TraesCS2B01G453500.2	Wheat	golgi, mitochondrion, plastid	65.42	61.27
KRH02771	Soybean	golgi, plastid	60.96	58.86
Zm00001d019006_P001	Maize	cytosol	23.35	58.48
Zm00001d003736_P001	Maize	plastid	31.91	41.92
CDX90221	Canola	golgi	36.54	33.83
CDX99872	Canola	golgi, plastid	37.08	33.71
CDY35266	Canola	golgi	36.54	33.61
CDY26300	Canola	golgi	36.9	33.55
CDY68502	Canola	extracellular, golgi	18.54	29.38
CDY27620	Canola	endoplasmic reticulum, golgi, vacuole	24.24	23.82
CDX96894	Canola	extracellular, golgi	24.42	22.24
CDX84922	Canola	cytosol	24.24	20.92
CDY14886	Canola	golgi	5.17	14.57

Protein Annotations

KEGG:00510+3.2.1.113	KEGG:00513+3.2.1.113	Gene3D:1.50.10.10	MapMan:18.1.1.6.3	InterPro:6hp_glycosidase-like_sf	GO:A0A078D4J3
EnsemblPlants:CDX82213	ProteinID:CDX82213	ProteinID:CDX82213.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004571
GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0016020	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00137306001
InterPro:Glyco_hydro_47	InterPro:IPR012341	PFAM:PF01532	PRINTS:PR00747	PANTHER:PTHR11742	PANTHER:PTHR11742:SF42
SUPFAM:SSF48225	InterPro:Seven-hairpin_glycosidases	TMHMM:TMhelix	UniPathway:UPA00378	UniParc:UPI0004EEF111	:

Description

BnaA03g36080D

Coordinates

chrLK031828:+:34121..37629

Molecular Weight (calculated)

63815.0 Da

IEP (calculated)

8.568

GRAVY (calculated)

-0.436

Length

561 amino acids

Sequence
(BLAST)

001: MARSRLVTGH GIWKYFNPAY YHGRTMRLAL LFILFISVSM VAWDRQTRGQ DHELEVSKLN KQALRLQRML GDVKSVKEDA TMRTLKSVKE DPVDAGRRQR
101: VKEAMIHAWS SYEKYAWGKD ELQPQTKDGV DSFGGLGATI IDSLDTLYIM GLHEQFQKAR EWVATSLDFD KDYDASMFET TIRVVGGLLS SYDLSGDKLF
201: LEKAKDIADR LLPAWDTPSG IPYNIINLRH GNAHNPTWGG GDSNLAESGT EQLEFIALSQ RTGDPKYQQK VEKVITVLNK NYPADGLLPV YINPDTAKPS
301: YSTITFGGGG DSFYEYLLKV WVFGNKTLTV KHYRDMWEKS MNGLLSLVKK STPSSFTYIC EKSGSSLTHK MDELACFAPG MLALGSSGYD DPTQAKKFLT
401: LAEELAWTCY NFYESTPTKL AGENYVFNSG SDMSVGASSN ILRPENVESL FYLWRLTGNK TYQDWGWNIF EAFEKNSRIE TGYVGLKDVN TGVKDNKMQS
501: FFLAETLKYL YLLFSPATVI PLDEWVFNTE AHPLKIVPWK DQQRKPRVTL RKRRFGRMEH K

Best Arabidopsis Sequence Match ( AT3G21160.1 )
(BLAST)

001: MARNKLVSGS HGIWKYFNPA FYLRRPRRLA LLIILFVSVS MVVWDRQSLS RDYQFEVSKL NEEVLRLQQM LEEIKSVTED VSVNSLKDVQ EDPVDAQRMQ
101: RVKEAMVHAW SSYEKYAWGQ DELQPQTKDG VDSFGGLGAT MIDALDTLYI MGLDEQFQKA REWVASSLDF DKDYAASMFE TTIRVVGGLL SAYDLSGDKI
201: FLEKAMDIAD RLLPAWDTQS GIPYNIINLK HGNAHNPTWA GGDSILADSG TEQLEFIALS QRTGDPKYQQ KVEKVISVLN KNFPADGLLP IYINPDTANP
301: SQSTITFGAM GDSFYEYLLK VWVFGNKTSA VKHYRDMWEK SMNGLLSLVK KSTPLSFTYI CEKSGNSLID KMDELACFAP GMLALGASGY SDPAEGKKFL
401: TLAEELAWTC YNFYQSTPTK LAGENYFFNS GSDMSVGTSW NILRPETVES LFYLWRLTGN KTYQEWGWNI FEAFEKNSRI ESGYVGLKDV NTGVKDNKMQ
501: SFFLAETLKY LYLLFSPTTV IPLDEWVFNT EAHPLKIKSR NDQVNLKQSN KVLLRKPAFR IRQRHYGRIT KK

Arabidopsis Description

MNS2Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS2 [Source:UniProtKB/Swiss-Prot;Acc:Q8H116]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.