Factsheet for Solyc03g123900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

plastid 3
golgi 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

extracellular: 26583031
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26583031 doi

F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken

Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g065380.2.1
Solyc11g018610.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21160.1	Solyc06g065380.2.1	AT4G09570.1	19130088
AT3G21160.1	Solyc11g018610.1.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023755	Potato	cytosol	44.56	98.47
Solyc06g063260.2.1	Tomato	golgi, mitochondrion	79.27	81.24
VIT_09s0054g00230.t01	Wine grape	cytosol	48.01	81.05
VIT_09s0054g00370.t01	Wine grape	golgi, mitochondrion	78.58	79.13
CDY46554	Canola	golgi, mitochondrion	72.37	74.82
CDY52948	Canola	golgi, mitochondrion	71.85	74.55
AT1G51590.1	Thale cress	golgi, mitochondrion	71.85	74.29
CDY55669	Canola	golgi, mitochondrion, plastid	71.85	74.15
KRH47289	Soybean	endoplasmic reticulum	73.75	74.13
VIT_09s0054g00310.t01	Wine grape	cytosol	11.74	73.91
CDY22853	Canola	golgi, mitochondrion, plastid	71.5	73.8
Bra018917.1-P	Field mustard	golgi, mitochondrion, plastid	71.5	73.8
KRH44626	Soybean	mitochondrion	73.4	73.53
AT3G21160.1	Thale cress	golgi	71.16	72.03
CDY50074	Canola	golgi, mitochondrion, plastid	70.29	70.66
CDY19581	Canola	golgi, mitochondrion, plastid	70.64	70.64
Bra031256.1-P	Field mustard	golgi, mitochondrion, plastid	69.95	69.95
CDX82213	Canola	golgi, mitochondrion	67.53	69.7
CDY32409	Canola	golgi, mitochondrion	67.01	69.16
Bra001816.1-P	Field mustard	golgi, mitochondrion	67.88	68.83
Bra014291.1-P	Field mustard	mitochondrion	71.68	63.07
Solyc02g070520.2.1	Tomato	nucleus	35.58	32.75
Solyc03g113900.2.1	Tomato	golgi	24.01	24.05
Solyc06g053860.2.1	Tomato	endoplasmic reticulum, golgi	24.52	22.98

Protein Annotations

KEGG:00510+3.2.1.113	KEGG:00513+3.2.1.113	Gene3D:1.50.10.10	MapMan:18.1.1.6.3	InterPro:6hp_glycosidase-like_sf	ncoils:Coil
GO:GO:0000139	GO:GO:0003674	GO:GO:0003824	GO:GO:0004571	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005794
GO:GO:0006491	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0016798	GO:GO:0019538	InterPro:Glyco_hydro_47	InterPro:IPR012341	UniProt:K4BN88
PFAM:PF01532	PRINTS:PR00747	PANTHER:PTHR11742	PANTHER:PTHR11742:SF42	SUPFAM:SSF48225	InterPro:Seven-hairpin_glycosidases
EnsemblPlantsGene:Solyc03g123900.2	EnsemblPlants:Solyc03g123900.2.1	TMHMM:TMhelix	UniParc:UPI0002765DFB	SEG:seg	:

Description

alpha-1,2-Mannosidase [Source:UniProtKB/TrEMBL;Acc:K4BN88]

Coordinates

chr3:-:70591528..70607157

Molecular Weight (calculated)

65982.7 Da

IEP (calculated)

6.314

GRAVY (calculated)

-0.466

Length

579 amino acids

Sequence
(BLAST)

001: MARSRSSSTV WRYINPAYYL KRPKRLALLF IVFVFATFFF WDRQTLLRDH EEEISKLNEE VIHLRNLLEE LKNGGDISIS KKKYSGEGGQ AVKNMDSPDN
101: ILDAQRRERV KDAMLHAWSS YEKYAWGHDE LQPQTKNGVD SFGGLGATLI DSLDTLYIMG LDEQFQRARK WVANSLDFNK NYDASVFETT IRVVGGLLST
201: YDLSGDKLFL DKAQDIADRL LPAWNTESGI PYNIINLAHG NPHNPGWTGG DSILADSGTE QLEFIALSQR TGDRKYQQKV ENVILELNRT FPDDGLLPIY
301: INPHKGTTSY STITFGAMGD SFYEYLLKVW IQGNRTAAVS HYRKMWETSM KGLQSLVRRT TPSSFAYLGE KMGSSVNDKM DELACFAPGM LALGSSGYSP
401: DEAQKFLSLA EELAWTCYNF YQSTPTKLAG ENYFFNDGQD MSVGTSWNIL RPETVESLFY LWRLTGNKTY QEWGWNIFQA FEKNSRVESG YVGLKDVNTG
501: VKDNMMQSFF LAETLKYLYL LFSPSSVISL DEWVFNTEAH PIKIVTRNDR AVSSGRSGGS EESDRQLRTR KEGRFRVHH

Best Arabidopsis Sequence Match ( AT1G51590.1 )
(BLAST)

001: MARSRSISGY GIWKYLNPAY YLRRPRRLAL LFIVFVSVSM LVWDRINLAR EHEVEVFKLN EEVSRLEQML EELNGGVGNK PLKTLKDAPE DPVDKQRRQK
101: VKEAMIHAWS SYEKYAWGKD ELQPRTKDGT DSFGGLGATM VDSLDTLYIM GLDEQFQKAR EWVASSLDFD KDYDASMFET TIRVVGGLLS AYDLSGDKMF
201: LEKAKDIADR LLPAWNTPTG IPYNIINLRN GNAHNPSWAA GGDSILADSG TEQLEFIALS QRTGDPKYQQ KVEKVITELN KNFPADGLLP IYINPDNANP
301: SYSTTTFGAM GDSFYEYLLK VWVQGNKTSA VKPYRDMWEK SMKGLLSLVK KSTPSSFTYI CEKNGNNLID KMDELACFAP GMLALGASGY GPDEEKKFLS
401: LAGELAWTCY NFYQSTPTKL AGENYFFTAG QDMSVGTSWN ILRPETVESL FYLWRLTGNK TYQEWGWNIF QAFEKNSRVE SGYVGLKDVN TGAKDNKMQS
501: FFLAETLKYL YLLFSPSSVI SLDEWVFNTE AHPLKIVARN DPRKPTIALR QRKFGHQINV

Arabidopsis Description

MNS1Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C512]
SUBAcon: [mitochondrion,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.