Factsheet for Solyc02g070520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
golgi 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g03280.t01	Wine grape	cytosol	75.83	74.65
Bra010804.1-P	Field mustard	golgi	70.11	72.77
CDX90221	Canola	golgi	69.79	72.44
KRH11192	Soybean	endoplasmic reticulum	72.02	71.56
CDY35266	Canola	golgi	69.32	71.48
KRH21064	Soybean	endoplasmic reticulum	71.54	70.98
CDY26300	Canola	golgi	69.16	70.5
Bra032351.1-P	Field mustard	golgi	69.16	70.5
CDX99872	Canola	golgi, plastid	68.84	70.18
GSMUA_Achr10P...	Banana	golgi	66.77	69.65
EES19212	Sorghum	plastid	67.89	66.51
Zm00001d010454_P001	Maize	plasma membrane	67.57	66.2
AT1G30000.2	Thale cress	extracellular, golgi, plasma membrane	67.73	66.15
Os05t0209100-01	Rice	cytosol, golgi, plastid	67.25	65.58
TraesCS1D01G127200.2	Wheat	plastid	66.93	65.47
HORVU1Hr1G029490.1	Barley	plastid	66.93	65.47
TraesCS1B01G145500.1	Wheat	plastid	66.3	64.85
TraesCS1A01G126300.2	Wheat	plastid	67.09	64.62
GSMUA_Achr6P14460_001	Banana	cytosol	68.52	58.96
Solyc06g063260.2.1	Tomato	golgi, mitochondrion	32.27	35.93
Solyc03g123900.2.1	Tomato	extracellular, nucleus	32.75	35.58
Solyc06g053860.2.1	Tomato	endoplasmic reticulum, golgi	22.42	22.82
Solyc03g113900.2.1	Tomato	golgi	20.03	21.8

Protein Annotations

KEGG:00510+3.2.1.113	KEGG:00513+3.2.1.113	Gene3D:1.50.10.10	MapMan:19.1.1.1.3	InterPro:6hp_glycosidase-like_sf	GO:GO:0000139
GO:GO:0003674	GO:GO:0003824	GO:GO:0004571	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005794	GO:GO:0006491
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	GO:GO:0016798
GO:GO:0019538	InterPro:Glyco_hydro_47	InterPro:IPR012341	UniProt:K4B833	PFAM:PF01532	PRINTS:PR00747
PANTHER:PTHR11742	PANTHER:PTHR11742:SF55	SUPFAM:SSF48225	InterPro:Seven-hairpin_glycosidases	EnsemblPlantsGene:Solyc02g070520.2	EnsemblPlants:Solyc02g070520.2.1
UniParc:UPI0002768853	SEG:seg	:	:	:	:

Description

Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 [Source:Projected from Arabidopsis thaliana (AT1G30000) UniProtKB/Swiss-Prot;Acc:Q93Y37]

Coordinates

chr2:+:40252323..40261352

Molecular Weight (calculated)

70253.3 Da

IEP (calculated)

7.768

GRAVY (calculated)

-0.329

Length

629 amino acids

Sequence
(BLAST)

001: MSKSLPYSMK DVHYDNAKFR QRSVSQVISQ VLLTSNGKRD YLKCSTGKLL VLLMLGGLAY LVLTNKSAVH PVSDGIAKND GSKEGENLMT HGSGKFRRFW
101: RKPPRLPPRL SPDEIISRNR SIQESMKREE PEWVARQQKV KDAFIHAWSG YKAHAMGYDE LMPLSHRGVN GLGGLGATII DALDTAMIMG ADEVVHEAGS
201: WIEKHLPERI EKKGQVNLFE TTIRLLGGLL SAYHLSGGSQ GRIPEQKGPN PSIYLENAKN LADRLLTAFT ASPSDIPYSD VVLREKSAHP APDGLSSTAE
301: VATIQLEFNY LSYLTGDPKY STEAMKVLQH IKTLPKVEGL VPIYISPQSG QFSGDNIRLG SRGDSYYEYL IKVWLQQKGT NFSYLYDMYV EAIKGVRHLL
401: VRKSVPNGLV FVGELPYGQE GGFSPKMDHL VCFLPGTLAL GATKGLTKER AMRENLLTFE DMENLKLAED LAKTCVEIYS VTSTGLAPEI AYFNIEGNSE
501: GGPGGGNKSS KYLNDIIIKP ADRHNLLRPE TVESLFYLYR ITGDSKYREW GWQIFEAFEK YTKIDSGGYT SLDDVTVIPP QRRDKMETFF LGETLKYIYL
601: LFGNSTTIPL DEYVFNTEAH PIPIISRSV

Best Arabidopsis Sequence Match ( AT1G30000.1 )
(BLAST)

001: MSKSLPYSVK DIHYDNAKFR HRSPLKVFSQ SLLTLSTKRN YASCSTGKFL ILILFFGVAC LMLMSKSPNE SGLNEKGKVT FVGGLRLGGL LRKPPRLPPR
101: LSPDEGQLRG SSTNGSTISN SDPKWAARQQ SVKEAFDHAW SGYRKYAMGY DELMPISQKG VDGLGGLGAT VVDALDTAMI MGLDNIVSEA GSWVETHLLE
201: RISQKGQVNL FETTIRVLGG LLSAYHLSGG EQGTVNMTHV GPKPVIYLNI AKDLADRLLS AFTSSPTPVP FCDVILHEST AHPAPGGASS TAEVASVQLE
301: FNYLSSISGD PKYSTEAMKV LAHIKTLPKT EGLVPIYISP QTGDFVGENI RLGSRGDSYY EYLIKVWLQQ GAKLNSNFTY LHDMYIEAMK GVRHLLVQNS
401: IPKGLVFVGE LPYGSKGEFS PKMDHLVCFL PGTLALGATK GLTKEQALKE NLLSFEDLEN LKLAEDLAKT CFEMYEVTAT GLAPEIAYFH TKDYTEDGLD
501: GGNKSSMYAN DIIIKPADRH NLLRPETVES LFVLYRITKD TKYRDQGWQI FEAFEKYTKV KSGGYTSLDD VTEVPPHRRD KMETFFLGET LKYLYLLFGD
601: DSVIPLDKFV FNTEAHPLPI RRNT

Arabidopsis Description

MNS3alpha-mannosidase 3 [Source:TAIR;Acc:AT1G30000]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.