CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
golgi 4
mitochondrion 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	golgi
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	golgi

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11192	Soybean	endoplasmic reticulum	95.74	95.89
VIT_10s0003g03280.t01	Wine grape	cytosol	75.71	75.12
Bra010804.1-P	Field mustard	golgi	71.61	74.92
CDX90221	Canola	golgi	71.29	74.59
CDY35266	Canola	golgi	70.82	73.61
CDY26300	Canola	golgi	70.19	72.12
Bra032351.1-P	Field mustard	golgi	70.19	72.12
CDX99872	Canola	golgi, plastid	69.87	71.8
Solyc02g070520.2.1	Tomato	nucleus	70.98	71.54
GSMUA_Achr10P...	Banana	golgi	66.72	70.15
AT1G30000.2	Thale cress	extracellular, golgi, plasma membrane	69.24	68.17
Os05t0209100-01	Rice	cytosol, golgi, plastid	67.19	66.05
EES19212	Sorghum	plastid	66.72	65.89
Zm00001d010454_P001	Maize	plasma membrane	65.46	64.64
TraesCS1D01G127200.2	Wheat	plastid	65.14	64.23
HORVU1Hr1G029490.1	Barley	plastid	65.14	64.23
TraesCS1B01G145500.1	Wheat	plastid	64.83	63.92
TraesCS1A01G126300.2	Wheat	plastid	65.62	63.71
GSMUA_Achr6P14460_001	Banana	cytosol	68.93	59.78
KRH58075	Soybean	extracellular	6.31	42.55
KRH19110	Soybean	cytosol	23.19	39.3
KRH47289	Soybean	endoplasmic reticulum	32.97	36.28
KRH44626	Soybean	mitochondrion	32.81	35.99
KRH02771	Soybean	golgi, plastid	32.33	35.28
KRH57025	Soybean	extracellular	8.83	27.59
KRH03356	Soybean	endoplasmic reticulum, golgi	21.29	23.6
KRH34374	Soybean	endoplasmic reticulum, golgi, vacuole	22.87	23.42

Protein Annotations

KEGG:00510+3.2.1.113	KEGG:00513+3.2.1.113	Gene3D:1.50.10.10	EntrezGene:100789211	MapMan:19.1.1.1.3	InterPro:6hp_glycosidase-like_sf
EMBL:ACUP02008336	EnsemblPlantsGene:GLYMA_13G217900	GO:GO:0000139	GO:GO:0003674	GO:GO:0003824	GO:GO:0004571
GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005794	GO:GO:0006491	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016798	GO:GO:0019538	InterPro:Glyco_hydro_47
UniProt:I1M1F2	InterPro:IPR012341	EnsemblPlants:KRH21064	ProteinID:KRH21064	ProteinID:KRH21064.1	PFAM:PF01532
PRINTS:PR00747	PANTHER:PTHR11742	PANTHER:PTHR11742:SF55	SUPFAM:SSF48225	InterPro:Seven-hairpin_glycosidases	TMHMM:TMhelix
UniParc:UPI000233C08E	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:33096818..33101358

Molecular Weight (calculated)

70425.2 Da

IEP (calculated)

6.737

GRAVY (calculated)

-0.227

Length

634 amino acids

Sequence
(BLAST)

001: MSKSLPYSTK DVHYDNAKFR PRSFFKVVTQ NLLTSNLRRD CGSCSTGKFL FLLLIFGVAY LMLAHASSSG VVSDDQAIVN RKSFYANSSI VNGAGKIKRL
101: WRRPPRLPPR FSPDETGTGN GNGHVLGNPD VVRSMWIARQ KKVKEAFIHA WSGYKKFAMG YDELMPLSQH GIDGLGGLGA TVVDALDTAM IMGLDEVVAE
201: AGSWVEEQLS ERISKKGQVN LFETTIRVLG GLLSAYHLSG GEKGTNLTHA GPKPAVYLEI AKDLADRLLS AFTASPTAIP FSDVILHDKS AHPAPGGLSS
301: TSEVSTLQLE FNYLSQISGD QKYSLEAMKV MEHMKTLPKI EGLVPIYISP HSGEFSGENI RLGSRGDSYY EYLIKVWLQS GASSNTNTSF LYEMYKEAMN
401: GVRHLLVRKS IPNGLVFVGE LPYGSNSGFS PKMDHLVCFL PGTLAIGATK GLTKKQAMEN NMLNFEDLEN LKLAEDLTKT CFEMYAVTST GLAPEIAYFH
501: TEEFSEEGHD GGNKSSEFVN DIIIKPADRH NLLRPETVES LFVLYRITED PKYREWGWQI FEAFENHTKV DTGGYCSLDD VTSVPPHRRD KMETFFLGET
601: LKYFYLLFAD SSLIPLDKFV FNTEAHPIPI NLKK

Best Arabidopsis Sequence Match ( AT1G30000.1 )
(BLAST)

001: MSKSLPYSVK DIHYDNAKFR HRSPLKVFSQ SLLTLSTKRN YASCSTGKFL ILILFFGVAC LMLMSKSPNE SGLNEKGKVT FVGGLRLGGL LRKPPRLPPR
101: LSPDEGQLRG SSTNGSTISN SDPKWAARQQ SVKEAFDHAW SGYRKYAMGY DELMPISQKG VDGLGGLGAT VVDALDTAMI MGLDNIVSEA GSWVETHLLE
201: RISQKGQVNL FETTIRVLGG LLSAYHLSGG EQGTVNMTHV GPKPVIYLNI AKDLADRLLS AFTSSPTPVP FCDVILHEST AHPAPGGASS TAEVASVQLE
301: FNYLSSISGD PKYSTEAMKV LAHIKTLPKT EGLVPIYISP QTGDFVGENI RLGSRGDSYY EYLIKVWLQQ GAKLNSNFTY LHDMYIEAMK GVRHLLVQNS
401: IPKGLVFVGE LPYGSKGEFS PKMDHLVCFL PGTLALGATK GLTKEQALKE NLLSFEDLEN LKLAEDLAKT CFEMYEVTAT GLAPEIAYFH TKDYTEDGLD
501: GGNKSSMYAN DIIIKPADRH NLLRPETVES LFVLYRITKD TKYRDQGWQI FEAFEKYTKV KSGGYTSLDD VTEVPPHRRD KMETFFLGET LKYLYLLFGD
601: DSVIPLDKFV FNTEAHPLPI RRNT

Arabidopsis Description

MNS3alpha-mannosidase 3 [Source:TAIR;Acc:AT1G30000]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.