CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
golgi 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21160.1	KRG91803	AT4G09570.1	19130088
AT3G21160.1	KRH34983	AT4G09570.1	19130088
AT3G21160.1	KRH34984	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47289	Soybean	endoplasmic reticulum	93.77	94.1
KRH58075	Soybean	extracellular	13.15	80.85
VIT_09s0054g00370.t01	Wine grape	golgi, mitochondrion	78.89	79.3
VIT_09s0054g00230.t01	Wine grape	cytosol	46.89	79.01
PGSC0003DMT400023755	Potato	cytosol	34.78	76.72
VIT_09s0054g00310.t01	Wine grape	cytosol	12.11	76.09
AT1G51590.1	Thale cress	golgi, mitochondrion	71.28	73.57
Solyc03g123900.2.1	Tomato	extracellular, nucleus	73.53	73.4
Bra018917.1-P	Field mustard	golgi, mitochondrion, plastid	71.11	73.26
CDY46554	Canola	golgi, mitochondrion	70.93	73.21
CDY55669	Canola	golgi, mitochondrion, plastid	70.93	73.08
CDY52948	Canola	golgi, mitochondrion	70.24	72.76
CDY22853	Canola	golgi, mitochondrion, plastid	70.59	72.73
Solyc06g063260.2.1	Tomato	golgi, mitochondrion	70.24	71.86
CDY50074	Canola	golgi, mitochondrion, plastid	69.55	69.79
Bra031256.1-P	Field mustard	golgi, mitochondrion, plastid	69.72	69.6
AT3G21160.1	Thale cress	golgi	68.86	69.58
CDX82213	Canola	golgi, mitochondrion	67.47	69.52
Bra001816.1-P	Field mustard	golgi, mitochondrion	68.17	69.0
CDY32409	Canola	golgi, mitochondrion	66.78	68.81
CDY19581	Canola	golgi, mitochondrion, plastid	68.86	68.74
KRH19110	Soybean	cytosol	42.39	65.51
KRH02771	Soybean	golgi, plastid	64.88	64.54
Bra014291.1-P	Field mustard	mitochondrion	71.8	63.07
KRH11192	Soybean	endoplasmic reticulum	35.99	32.86
KRH21064	Soybean	endoplasmic reticulum	35.99	32.81
KRH57025	Soybean	extracellular	11.07	31.53
KRH03356	Soybean	endoplasmic reticulum, golgi	23.88	24.13
KRH34374	Soybean	endoplasmic reticulum, golgi, vacuole	24.39	22.78

Protein Annotations

KEGG:00510+3.2.1.113	KEGG:00513+3.2.1.113	Gene3D:1.50.10.10	MapMan:18.1.1.6.3	EntrezGene:547540	InterPro:6hp_glycosidase-like_sf
EMBL:ACUP02004945	EMBL:AF126550	CHEMBL:CHEMBL4193	ncoils:Coil	EnsemblPlantsGene:GLYMA_08G221900	GO:GO:0000139
GO:GO:0003674	GO:GO:0003824	GO:GO:0004571	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005794	GO:GO:0006491
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016798	GO:GO:0019538	InterPro:Glyco_hydro_47	InterPro:IPR012341	EnsemblPlants:KRH44626	ProteinID:KRH44626
ProteinID:KRH44626.1	PFAM:PF01532	PRINTS:PR00747	PANTHER:PTHR11742	PANTHER:PTHR11742:SF42	UniProt:Q9SEH8
SUPFAM:SSF48225	InterPro:Seven-hairpin_glycosidases	TMHMM:TMhelix	UniParc:UPI000009EE5A	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:+:18012907..18019695

Molecular Weight (calculated)

65348.2 Da

IEP (calculated)

6.615

GRAVY (calculated)

-0.407

Length

578 amino acids

Sequence
(BLAST)

001: MARGSRSVGS SSSKWRYCNP SYYLKRPKRL ALLFIVFVCV SFVFWDRQTL VREHQVEISE LQKEVTDLKN LVDDLNNKQG GTSGKTDLGR KATKSSKDVL
101: DDPIDIERRE KVKEAMLHAW GSYEKYAWGQ DELQPQSKNG VNSFGGLGAT LIDSLDTLYI MGLNEQFQKA REWVANSLDF NKDYEASVFE TTIRVVGGLL
201: SAYDLSGDKV FLDKAIEIAD RLLPAWNTPT GIPYNIINLS HGRAHNPSWT GGESILADSG TEQLEFIVLS QRTGDLKYQQ KVENVIAQLN KTFPDDGLLP
301: IYINPHSGAA GYSPITFGAM GDSFYEYLLK VWIQGNKTSS IKHYRDMWEK SMKGLSSLIR RSTPSSFTYI CEKNGGSLTD KMDELACFAP GMIALGSFGY
401: SAADDSQKFL SLAEELAWTC YNFYQSTPTK LAGENYFFHS GQDMSVGTSW NILRPETVES LFYLWRLTGN KTYQEWGWNI FQAFEKNSRI ESGYVGLKDV
501: NSGVKDNMMQ SFFLAETLKY FYLLFSPSSV ISLDEWVFNT EAHPLRIVTR HEEGLVKNLN EKQKPFSRIG GRKEGRSG

Best Arabidopsis Sequence Match ( AT1G51590.1 )
(BLAST)

001: MARSRSISGY GIWKYLNPAY YLRRPRRLAL LFIVFVSVSM LVWDRINLAR EHEVEVFKLN EEVSRLEQML EELNGGVGNK PLKTLKDAPE DPVDKQRRQK
101: VKEAMIHAWS SYEKYAWGKD ELQPRTKDGT DSFGGLGATM VDSLDTLYIM GLDEQFQKAR EWVASSLDFD KDYDASMFET TIRVVGGLLS AYDLSGDKMF
201: LEKAKDIADR LLPAWNTPTG IPYNIINLRN GNAHNPSWAA GGDSILADSG TEQLEFIALS QRTGDPKYQQ KVEKVITELN KNFPADGLLP IYINPDNANP
301: SYSTTTFGAM GDSFYEYLLK VWVQGNKTSA VKPYRDMWEK SMKGLLSLVK KSTPSSFTYI CEKNGNNLID KMDELACFAP GMLALGASGY GPDEEKKFLS
401: LAGELAWTCY NFYQSTPTKL AGENYFFTAG QDMSVGTSWN ILRPETVESL FYLWRLTGNK TYQEWGWNIF QAFEKNSRVE SGYVGLKDVN TGAKDNKMQS
501: FFLAETLKYL YLLFSPSSVI SLDEWVFNTE AHPLKIVARN DPRKPTIALR QRKFGHQINV

Arabidopsis Description

MNS1Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C512]
SUBAcon: [mitochondrion,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.