Factsheet for VIT_09s0054g00230.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 1
plastid 2
cytosol 3
mitochondrion 2
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0072g01030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21160.1	VIT_18s0072g01030.t01	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023755	Potato	cytosol	59.48	77.86
VIT_09s0054g00310.t01	Wine grape	cytosol	19.83	73.91
VIT_11s0052g00150.t01	Wine grape	extracellular, golgi, vacuole	15.16	53.61
VIT_09s0054g00370.t01	Wine grape	golgi, mitochondrion	89.21	53.22
Solyc03g123900.2.1	Tomato	extracellular, nucleus	81.05	48.01
AT1G51590.1	Thale cress	golgi, mitochondrion	77.26	47.32
KRH47289	Soybean	endoplasmic reticulum	79.01	47.05
KRH44626	Soybean	mitochondrion	79.01	46.89
Bra018917.1-P	Field mustard	golgi, mitochondrion, plastid	76.68	46.88
CDY55669	Canola	golgi, mitochondrion, plastid	76.68	46.88
CDY22853	Canola	golgi, mitochondrion, plastid	76.38	46.7
CDY46554	Canola	golgi, mitochondrion	75.8	46.43
CDY52948	Canola	golgi, mitochondrion	75.22	46.24
Solyc06g063260.2.1	Tomato	golgi, mitochondrion	75.22	45.66
AT3G21160.1	Thale cress	golgi	75.51	45.28
CDY50074	Canola	golgi, mitochondrion, plastid	74.05	44.1
CDY19581	Canola	golgi, mitochondrion, plastid	74.05	43.87
Bra031256.1-P	Field mustard	golgi, mitochondrion, plastid	74.05	43.87
CDX82213	Canola	golgi, mitochondrion	71.43	43.67
CDY32409	Canola	golgi, mitochondrion	70.85	43.32
Bra001816.1-P	Field mustard	golgi, mitochondrion	71.72	43.08
VIT_11s0052g00140.t01	Wine grape	golgi, mitochondrion	62.97	43.03
Bra014291.1-P	Field mustard	mitochondrion	76.09	39.67
VIT_10s0003g03280.t01	Wine grape	cytosol	39.36	21.13
VIT_17s0000g07760.t01	Wine grape	extracellular, golgi	23.91	14.31
VIT_05s0020g04650.t01	Wine grape	endoplasmic reticulum	22.45	11.29

Protein Annotations

KEGG:00510+3.2.1.113	KEGG:00513+3.2.1.113	Gene3D:1.50.10.10	MapMan:18.1.1.6.3	InterPro:6hp_glycosidase-like_sf	ProteinID:CBI18482
ProteinID:CBI18482.3	UniProt:D7SS50	EMBL:FN594972	GO:GO:0000139	GO:GO:0003674	GO:GO:0003824
GO:GO:0004571	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005794	GO:GO:0006491	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	GO:GO:0016798	GO:GO:0019538	InterPro:Glyco_hydro_47
InterPro:IPR012341	PFAM:PF01532	PRINTS:PR00747	PANTHER:PTHR11742	PANTHER:PTHR11742:SF42	SUPFAM:SSF48225
InterPro:Seven-hairpin_glycosidases	UniParc:UPI0001BE12A1	ArrayExpress:VIT_09s0054g00230	EnsemblPlantsGene:VIT_09s0054g00230	EnsemblPlants:VIT_09s0054g00230.t01	SEG:seg

Description

alpha-1,2-Mannosidase [Source:UniProtKB/TrEMBL;Acc:D7SS50]

Coordinates

chr9:-:20565631..20573112

Molecular Weight (calculated)

38898.3 Da

IEP (calculated)

6.104

GRAVY (calculated)

-0.248

Length

343 amino acids

Sequence
(BLAST)

001: MPQFTAKILS HGNAHNPGWT GGDSILADSG TEQLEFIALS QRTGDPKYQK KVENVIIELN KTFPADGLLP IYINPHRGTS SYSTITFGAM GDSFYEYLLK
101: VWIQGNKTAD VKHYREMWET SMKGLLSLVR RTTSSSFTYI CEKNGDSLHD KMDGLACFAP GMIALGSLGY GPEESQKFLS LAEELAWTCY NFYQSTPTKL
201: AGENYFFHSG QDMSVGTSWN ILRPETVESL FYLWRLTGSK TYQEWGWNIF QAFEKNSRIE SGYVGLKDVN RDVKDNMMQS FFLAETLKYL YLLFSPSSVI
301: SLDEWVFNTE AHPIGIMTRH DNSIGCMAGR KVGELMIRIL FLF

Best Arabidopsis Sequence Match ( AT1G51590.1 )
(BLAST)

001: MARSRSISGY GIWKYLNPAY YLRRPRRLAL LFIVFVSVSM LVWDRINLAR EHEVEVFKLN EEVSRLEQML EELNGGVGNK PLKTLKDAPE DPVDKQRRQK
101: VKEAMIHAWS SYEKYAWGKD ELQPRTKDGT DSFGGLGATM VDSLDTLYIM GLDEQFQKAR EWVASSLDFD KDYDASMFET TIRVVGGLLS AYDLSGDKMF
201: LEKAKDIADR LLPAWNTPTG IPYNIINLRN GNAHNPSWAA GGDSILADSG TEQLEFIALS QRTGDPKYQQ KVEKVITELN KNFPADGLLP IYINPDNANP
301: SYSTTTFGAM GDSFYEYLLK VWVQGNKTSA VKPYRDMWEK SMKGLLSLVK KSTPSSFTYI CEKNGNNLID KMDELACFAP GMLALGASGY GPDEEKKFLS
401: LAGELAWTCY NFYQSTPTKL AGENYFFTAG QDMSVGTSWN ILRPETVESL FYLWRLTGNK TYQEWGWNIF QAFEKNSRVE SGYVGLKDVN TGAKDNKMQS
501: FFLAETLKYL YLLFSPSSVI SLDEWVFNTE AHPLKIVARN DPRKPTIALR QRKFGHQINV

Arabidopsis Description

MNS1Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C512]
SUBAcon: [mitochondrion,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.