Factsheet for VIT_11s0052g00140.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi

Predictor Summary:

plastid 2
golgi 3
mitochondrion 4
extracellular 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0072g01030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21160.1	VIT_18s0072g01030.t01	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58075	Soybean	extracellular	14.94	79.79
VIT_09s0054g00310.t01	Wine grape	cytosol	12.55	68.48
VIT_09s0054g00370.t01	Wine grape	golgi, mitochondrion	72.51	63.3
VIT_09s0054g00230.t01	Wine grape	cytosol	43.03	62.97
AT1G51590.1	Thale cress	golgi, mitochondrion	68.13	61.07
CDY52948	Canola	golgi, mitochondrion	67.13	60.39
CDY22853	Canola	golgi, mitochondrion, plastid	67.33	60.25
CDY46554	Canola	golgi, mitochondrion	67.13	60.18
Zm00001d031739_P001	Maize	cytosol	14.34	60.0
Bra018917.1-P	Field mustard	golgi, mitochondrion, plastid	66.93	59.89
GSMUA_Achr2P04510_001	Banana	golgi, mitochondrion	69.12	59.72
CDY55669	Canola	golgi, mitochondrion, plastid	66.73	59.71
AT3G21160.1	Thale cress	golgi	66.33	58.22
Zm00001d025428_P002	Maize	cytosol	12.95	58.04
KRH19110	Soybean	cytosol	43.03	57.75
KRH02771	Soybean	golgi, plastid	66.73	57.66
CDY50074	Canola	golgi, mitochondrion, plastid	66.14	57.64
EES12812	Sorghum	golgi, mitochondrion, plastid	64.54	57.45
CDY19581	Canola	golgi, mitochondrion, plastid	66.14	57.34
Zm00001d002388_P003	Maize	golgi, mitochondrion, plastid	64.34	57.17
Bra001816.1-P	Field mustard	golgi, mitochondrion	64.94	57.09
CDX82213	Canola	golgi, mitochondrion	63.74	57.04
Bra031256.1-P	Field mustard	golgi, mitochondrion, plastid	65.74	56.99
GSMUA_Achr4P12680_001	Banana	golgi	52.19	56.83
Zm00001d026257_P003	Maize	golgi, mitochondrion	63.74	56.74
Os04t0606400-01	Rice	golgi	64.54	56.64
CDY32409	Canola	golgi, mitochondrion	63.15	56.51
TraesCS2A01G432100.2	Wheat	golgi, mitochondrion, plastid	63.35	53.09
HORVU2Hr1G100750.2	Barley	golgi, mitochondrion, plastid	62.95	52.75
TraesCS2D01G430000.2	Wheat	golgi	62.95	52.75
TraesCS2B01G453500.2	Wheat	golgi, mitochondrion, plastid	62.95	52.75
Bra014291.1-P	Field mustard	mitochondrion	66.93	51.06
Zm00001d019006_P001	Maize	cytosol	18.33	41.07
Zm00001d003736_P001	Maize	plastid	28.69	33.72
VIT_10s0003g03280.t01	Wine grape	cytosol	34.66	27.23
VIT_17s0000g07760.t01	Wine grape	extracellular, golgi	22.11	19.37
VIT_05s0020g04650.t01	Wine grape	endoplasmic reticulum	24.1	17.74
VIT_11s0052g00150.t01	Wine grape	extracellular, golgi, vacuole	1.59	8.25

Protein Annotations

KEGG:00510+3.2.1.113	KEGG:00513+3.2.1.113	Gene3D:1.50.10.10	EntrezGene:100242790	wikigene:100242790	MapMan:18.1.1.6.3
InterPro:6hp_glycosidase-like_sf	ProteinID:CCB44687	ProteinID:CCB44687.1	ncoils:Coil	UniProt:F6GXK1	EMBL:FN594964
GO:GO:0000139	GO:GO:0003674	GO:GO:0003824	GO:GO:0004571	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005794
GO:GO:0006491	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0016798	GO:GO:0019538	InterPro:Glyco_hydro_47	InterPro:IPR012341	EntrezGene:LOC100242790
wikigene:LOC100242790	PFAM:PF01532	PRINTS:PR00747	PANTHER:PTHR11742	PANTHER:PTHR11742:SF42	SUPFAM:SSF48225
InterPro:Seven-hairpin_glycosidases	TMHMM:TMhelix	UniParc:UPI00021091FD	ArrayExpress:VIT_11s0052g00140	EnsemblPlantsGene:VIT_11s0052g00140	EnsemblPlants:VIT_11s0052g00140.t01
RefSeq:XP_002263484	RefSeq:XP_002263484.2	SEG:seg	:	:	:

Description

alpha-1,2-Mannosidase [Source:UniProtKB/TrEMBL;Acc:F6GXK1]

Coordinates

chr11:+:17162761..17201645

Molecular Weight (calculated)

57374.8 Da

IEP (calculated)

4.989

GRAVY (calculated)

-0.375

Length

502 amino acids

Sequence
(BLAST)

001: MGKTRSSSSS PSLPLRWWRR TLVLVFIGFV AVTFIVWDRI TLTRDHTVEV LRLNEELIDL QNLLEDLKNY LRDLGLSIQL SDRVSEPAKE SIGQDDPTNF
101: RRREQVKDAM IHAWSSYEKY AWGQDELQPQ TKNGIDTFGG LGATIVDCLD TLFIMGLDEQ FQRAREWVAN SLDFNKNYEA SVFETTIRVL GGLLSAYDLS
201: GDKVFLEKAQ DIADRLLPAW NTPSGIPYNR INLAYGNANN PGWTGGNSVL ADSGTEQLEF IALSQRTRDP KYQKKVENVI KELGRTFPLD GLLPVYINPH
301: TGATSSSIYT FGAMGDSFYE YLLKAWIQGN KTEAVKHYRE MWETSMEGLK SLIRRTTPSS FAYICEKNGR FLSDKMDELA CFAPGMLALA SYDYGPGEAE
401: KYLSLAEELA WTCYNFYQST PMKLAGENYF FSAGQDMSVD TSWNILRPET IESLFYLWRI TGNKTYQEWG WNIFQAFEKN SRIETGYVGH KNVRIFPTQS
501: FW

Best Arabidopsis Sequence Match ( AT1G51590.1 )
(BLAST)

001: MARSRSISGY GIWKYLNPAY YLRRPRRLAL LFIVFVSVSM LVWDRINLAR EHEVEVFKLN EEVSRLEQML EELNGGVGNK PLKTLKDAPE DPVDKQRRQK
101: VKEAMIHAWS SYEKYAWGKD ELQPRTKDGT DSFGGLGATM VDSLDTLYIM GLDEQFQKAR EWVASSLDFD KDYDASMFET TIRVVGGLLS AYDLSGDKMF
201: LEKAKDIADR LLPAWNTPTG IPYNIINLRN GNAHNPSWAA GGDSILADSG TEQLEFIALS QRTGDPKYQQ KVEKVITELN KNFPADGLLP IYINPDNANP
301: SYSTTTFGAM GDSFYEYLLK VWVQGNKTSA VKPYRDMWEK SMKGLLSLVK KSTPSSFTYI CEKNGNNLID KMDELACFAP GMLALGASGY GPDEEKKFLS
401: LAGELAWTCY NFYQSTPTKL AGENYFFTAG QDMSVGTSWN ILRPETVESL FYLWRLTGNK TYQEWGWNIF QAFEKNSRVE SGYVGLKDVN TGAKDNKMQS
501: FFLAETLKYL YLLFSPSSVI SLDEWVFNTE AHPLKIVARN DPRKPTIALR QRKFGHQINV

Arabidopsis Description

MNS1Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C512]
SUBAcon: [mitochondrion,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.