CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, plastid

Predictor Summary:

plastid 3
golgi 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES09373
EES16732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21160.1	EES09373	AT4G09570.1	19130088
AT3G21160.1	EES16732	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002388_P003	Maize	golgi, mitochondrion, plastid	96.45	96.28
Zm00001d026257_P003	Maize	golgi, mitochondrion	95.92	95.92
Os04t0606400-01	Rice	golgi	90.6	89.34
TraesCS2A01G432100.2	Wheat	golgi, mitochondrion, plastid	84.4	79.47
HORVU2Hr1G100750.2	Barley	golgi, mitochondrion, plastid	84.4	79.47
TraesCS2D01G430000.2	Wheat	golgi	84.04	79.13
TraesCS2B01G453500.2	Wheat	golgi, mitochondrion, plastid	83.51	78.63
GSMUA_Achr2P04510_001	Banana	golgi, mitochondrion	79.08	76.76
KRH58075	Soybean	extracellular	12.41	74.47
Zm00001d031739_P001	Maize	cytosol	15.6	73.33
CDY46554	Canola	golgi, mitochondrion	71.45	71.96
AT1G51590.1	Thale cress	golgi, mitochondrion	71.1	71.61
Zm00001d025428_P002	Maize	cytosol	14.18	71.43
GSMUA_Achr4P12680_001	Banana	golgi	58.33	71.37
CDY52948	Canola	golgi, mitochondrion	70.57	71.33
CDY55669	Canola	golgi, mitochondrion, plastid	70.92	71.3
Bra018917.1-P	Field mustard	golgi, mitochondrion, plastid	70.92	71.3
CDY22853	Canola	golgi, mitochondrion, plastid	70.92	71.3
AT3G21160.1	Thale cress	golgi	69.15	68.18
CDX82213	Canola	golgi, mitochondrion	66.84	67.2
CDY19581	Canola	golgi, mitochondrion, plastid	68.97	67.18
CDY32409	Canola	golgi, mitochondrion	66.31	66.67
Bra031256.1-P	Field mustard	golgi, mitochondrion, plastid	68.09	66.32
CDY50074	Canola	golgi, mitochondrion, plastid	67.73	66.32
Bra001816.1-P	Field mustard	golgi, mitochondrion	66.67	65.85
KRH19110	Soybean	cytosol	42.91	64.71
VIT_11s0052g00140.t01	Wine grape	golgi, mitochondrion	57.45	64.54
KRH02771	Soybean	golgi, plastid	63.48	61.62
Bra014291.1-P	Field mustard	mitochondrion	70.39	60.33
EES19212	Sorghum	plastid	36.52	32.09
EES05547	Sorghum	endoplasmic reticulum, golgi	25.35	24.7
KXG33484	Sorghum	golgi	25.71	21.97

Protein Annotations

KEGG:00510+3.2.1.113	KEGG:00513+3.2.1.113	Gene3D:1.50.10.10	MapMan:18.1.1.6.3	InterPro:6hp_glycosidase-like_sf	EntrezGene:8072301
UniProt:C5YFJ2	ncoils:Coil	EnsemblPlants:EES12812	ProteinID:EES12812	ProteinID:EES12812.1	GO:GO:0000139
GO:GO:0003674	GO:GO:0003824	GO:GO:0004571	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005794	GO:GO:0006491
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	GO:GO:0016798
GO:GO:0019538	InterPro:Glyco_hydro_47	InterPro:IPR012341	PFAM:PF01532	PRINTS:PR00747	PANTHER:PTHR11742
PANTHER:PTHR11742:SF42	EnsemblPlantsGene:SORBI_3006G207200	SUPFAM:SSF48225	unigene:Sbi.4235	InterPro:Seven-hairpin_glycosidases	TMHMM:TMhelix
UniParc:UPI0001A874EE	RefSeq:XP_002448484.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:55691307..55697065

Molecular Weight (calculated)

64178.7 Da

IEP (calculated)

5.714

GRAVY (calculated)

-0.483

Length

564 amino acids

Sequence
(BLAST)

001: MARRSSSSSS GAWRYLNPAY YLKRPKRLAL LFFVFVAATF AFWDRQSLVS EYESEISRLE DDINRLHDQL RKAGVHLDEN PVVSNRNSRK DLVEIDPVNN
101: ERREKVKEAM LHAWNSYVKY AWGMDELQPQ SKNGINSFGG LGATLVDSLD TLYIMGLKDE FEKARDWVAE SLDFDKDYDA SVFETTIRVV GGLLSAYDLS
201: GDKVFLEKAK DITDRLLPAW DTTSGIPYNR INLAHGRAHN PGWTNGDSIL ADSGTEQLEF IALSQRTGDP KYQQKAENVI TQLQKIYPSD GLLPIYINPH
301: SGTASYSTIT FGAMGDSFYE YLLKVWVQGN KTEHVKHYRQ MWETSMEGLL SLTKKTTPSN YYYICEKNGG SLSDKMDELA CFAPGMLALG ASGYGPEKSE
401: QIMNLAKELA RTCYNFYQTT PTKLAGENYF FHTGQDMSVG TSWNILRPET VESLMYLWRL TGNKTYQDWG WDIFQAFEKN SRIESGYVGL RDVNTGEKDN
501: MMQSFFLAET LKYLYLLFSP PSVISFDEWV FNTEAHPLRI VPVNDNKGIG TPVRPFGRKQ GKPE

Best Arabidopsis Sequence Match ( AT1G51590.1 )
(BLAST)

001: MARSRSISGY GIWKYLNPAY YLRRPRRLAL LFIVFVSVSM LVWDRINLAR EHEVEVFKLN EEVSRLEQML EELNGGVGNK PLKTLKDAPE DPVDKQRRQK
101: VKEAMIHAWS SYEKYAWGKD ELQPRTKDGT DSFGGLGATM VDSLDTLYIM GLDEQFQKAR EWVASSLDFD KDYDASMFET TIRVVGGLLS AYDLSGDKMF
201: LEKAKDIADR LLPAWNTPTG IPYNIINLRN GNAHNPSWAA GGDSILADSG TEQLEFIALS QRTGDPKYQQ KVEKVITELN KNFPADGLLP IYINPDNANP
301: SYSTTTFGAM GDSFYEYLLK VWVQGNKTSA VKPYRDMWEK SMKGLLSLVK KSTPSSFTYI CEKNGNNLID KMDELACFAP GMLALGASGY GPDEEKKFLS
401: LAGELAWTCY NFYQSTPTKL AGENYFFTAG QDMSVGTSWN ILRPETVESL FYLWRLTGNK TYQEWGWNIF QAFEKNSRVE SGYVGLKDVN TGAKDNKMQS
501: FFLAETLKYL YLLFSPSSVI SLDEWVFNTE AHPLKIVARN DPRKPTIALR QRKFGHQINV

Arabidopsis Description

MNS1Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C512]
SUBAcon: [mitochondrion,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.