Factsheet for TraesCS2D01G430000.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
mitochondrion 4
golgi 2

Predictors

GFP

MS/MS

Papers

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21160.1	TraesCS4A01G206200.2	AT4G09570.1	19130088
AT3G21160.1	TraesCS4B01G109800.2	AT4G09570.1	19130088
AT3G21160.1	TraesCS4D01G107200.1	AT4G09570.1	19130088
AT3G21160.1	TraesCS5A01G107900.1	AT4G09570.1	19130088
AT3G21160.1	TraesCS5B01G115400.1	AT4G09570.1	19130088
AT3G21160.1	TraesCS5D01G122800.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G453500.2	Wheat	golgi, mitochondrion, plastid	98.83	98.83
TraesCS2A01G432100.2	Wheat	golgi, mitochondrion, plastid	98.5	98.5
HORVU2Hr1G100750.2	Barley	golgi, mitochondrion, plastid	97.83	97.83
Zm00001d002388_P003	Maize	golgi, mitochondrion, plastid	79.97	84.78
Zm00001d026257_P003	Maize	golgi, mitochondrion	79.13	84.04
EES12812	Sorghum	golgi, mitochondrion, plastid	79.13	84.04
Os04t0606400-01	Rice	golgi	78.96	82.69
GSMUA_Achr2P04510_001	Banana	golgi, mitochondrion	70.95	73.15
KRH58075	Soybean	extracellular	11.19	71.28
Zm00001d031739_P001	Maize	cytosol	14.02	70.0
AT1G51590.1	Thale cress	golgi, mitochondrion	64.61	69.11
Bra018917.1-P	Field mustard	golgi, mitochondrion, plastid	64.61	68.98
CDY22853	Canola	golgi, mitochondrion, plastid	64.61	68.98
CDY55669	Canola	golgi, mitochondrion, plastid	64.61	68.98
GSMUA_Achr4P12680_001	Banana	golgi	53.09	68.98
CDY46554	Canola	golgi, mitochondrion	63.44	67.86
CDY52948	Canola	golgi, mitochondrion	62.77	67.38
Zm00001d025428_P002	Maize	cytosol	12.52	66.96
CDX82213	Canola	golgi, mitochondrion	61.6	65.78
CDY50074	Canola	golgi, mitochondrion, plastid	62.94	65.45
CDY32409	Canola	golgi, mitochondrion	60.93	65.06
Bra031256.1-P	Field mustard	golgi, mitochondrion, plastid	62.77	64.94
AT3G21160.1	Thale cress	golgi	61.94	64.86
Bra001816.1-P	Field mustard	golgi, mitochondrion	61.44	64.45
CDY19581	Canola	golgi, mitochondrion, plastid	61.94	64.08
VIT_11s0052g00140.t01	Wine grape	golgi, mitochondrion	52.75	62.95
KRH19110	Soybean	cytosol	38.73	62.03
KRH02771	Soybean	golgi, plastid	59.27	61.1
Bra014291.1-P	Field mustard	mitochondrion	64.61	58.81
TraesCS1D01G127200.2	Wheat	plastid	35.89	33.44
TraesCS6D01G289200.1	Wheat	endoplasmic reticulum	24.21	25.0
TraesCS3D01G309300.1	Wheat	endoplasmic reticulum, golgi, vacuole	23.71	21.23

Protein Annotations

KEGG:00510+3.2.1.113	KEGG:00513+3.2.1.113	Gene3D:1.50.10.10	MapMan:18.1.1.6.3	InterPro:6hp_glycosidase-like_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004571	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0016020	GO:GO:0016787	InterPro:Glyco_hydro_47	InterPro:IPR012341	PFAM:PF01532	PRINTS:PR00747
PANTHER:PTHR11742	PANTHER:PTHR11742:SF42	SUPFAM:SSF48225	InterPro:Seven-hairpin_glycosidases	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS2D01G430000
EnsemblPlants:TraesCS2D01G430000.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:542248404..542254425

Molecular Weight (calculated)

67715.1 Da

IEP (calculated)

6.015

GRAVY (calculated)

-0.389

Length

599 amino acids

Sequence
(BLAST)

001: MARRSSSSSS SGAWRYLNPA YYLKRPKRLA LLFFVFVAAT FAFWDRQSLV SEHECPSCVR VNEGIVFSQE ILVTAHVFDV ITDGKSEISR LRNEINQLHG
101: QLRKAGVLLE ENPATEIPRK DLVEIDPINN ERREKVKEAM LHAWNSYVKY AWGMDELQPQ SKNGVNSFGG LGATLVDSLD TLYIMGLRDE FQKARDWVAE
201: SLSFDKDYDA SVFETTIRVV GGLLSAYDMS GDKVFLEKAK DIADRLLPAW DTTSGIPYNS INLAHGRAHN FGWTNGDSIL ADSGTEQLEF IALSQRTGDP
301: KYQLKAENVI RQLQKIYPSD GLLPIYINPQ SGQASYSTIT FGAMGDSFYE YLLKVWIQGN KTESVKHYRQ MWETSMEGLI SLTRQTTPSN YTYICEKSGG
401: SLSHKMDELA CFAPGMLALG ASGYGPEKAK QIMNLAEELA RTCYNFYQTT PTKLAGENYY FHAEQDMNVG TSWNILRPET VESLMYLWRL TGNKTYQDWG
501: WDIFEAFEKN SRIASGYVGL RDVNSGEKDD KMQTFFLAET LKYLYLLFSP PSVVSFDEWV FNTEAHPLRI VPTHGSNGQS IETAKPVVRP FGRKQGKQG

Best Arabidopsis Sequence Match ( AT1G51590.1 )
(BLAST)

001: MARSRSISGY GIWKYLNPAY YLRRPRRLAL LFIVFVSVSM LVWDRINLAR EHEVEVFKLN EEVSRLEQML EELNGGVGNK PLKTLKDAPE DPVDKQRRQK
101: VKEAMIHAWS SYEKYAWGKD ELQPRTKDGT DSFGGLGATM VDSLDTLYIM GLDEQFQKAR EWVASSLDFD KDYDASMFET TIRVVGGLLS AYDLSGDKMF
201: LEKAKDIADR LLPAWNTPTG IPYNIINLRN GNAHNPSWAA GGDSILADSG TEQLEFIALS QRTGDPKYQQ KVEKVITELN KNFPADGLLP IYINPDNANP
301: SYSTTTFGAM GDSFYEYLLK VWVQGNKTSA VKPYRDMWEK SMKGLLSLVK KSTPSSFTYI CEKNGNNLID KMDELACFAP GMLALGASGY GPDEEKKFLS
401: LAGELAWTCY NFYQSTPTKL AGENYFFTAG QDMSVGTSWN ILRPETVESL FYLWRLTGNK TYQEWGWNIF QAFEKNSRVE SGYVGLKDVN TGAKDNKMQS
501: FFLAETLKYL YLLFSPSSVI SLDEWVFNTE AHPLKIVARN DPRKPTIALR QRKFGHQINV

Arabidopsis Description

MNS1Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C512]
SUBAcon: [mitochondrion,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.