Factsheet for GSMUA_Achr4P12680_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
golgi 6
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr6P25560_001
GSMUA_Achr9P08680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21160.1	GSMUA_Achr10P...	AT4G09570.1	19130088
AT3G21160.1	GSMUA_Achr2P08110_001	AT4G09570.1	19130088
AT3G21160.1	GSMUA_Achr6P25560_001	AT4G09570.1	19130088
AT3G21160.1	GSMUA_Achr9P08680_001	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58075	Soybean	extracellular	15.62	76.6
Zm00001d019006_P001	Maize	cytosol	32.54	66.96
Zm00001d025428_P002	Maize	cytosol	14.75	60.71
KRH19110	Soybean	cytosol	49.02	60.43
GSMUA_Achr2P04510_001	Banana	golgi, mitochondrion	75.27	59.72
EES12812	Sorghum	golgi, mitochondrion, plastid	71.37	58.33
Zm00001d002388_P003	Maize	golgi, mitochondrion, plastid	70.93	57.88
Zm00001d026257_P003	Maize	golgi, mitochondrion	70.72	57.8
Os04t0606400-01	Rice	golgi	70.28	56.64
Zm00001d031739_P001	Maize	cytosol	14.53	55.83
CDY55669	Canola	golgi, mitochondrion, plastid	66.38	54.55
CDY22853	Canola	golgi, mitochondrion, plastid	66.38	54.55
Bra018917.1-P	Field mustard	golgi, mitochondrion, plastid	66.16	54.37
CDY46554	Canola	golgi, mitochondrion	65.73	54.11
AT1G51590.1	Thale cress	golgi, mitochondrion	65.51	53.93
HORVU2Hr1G100750.2	Barley	golgi, mitochondrion, plastid	69.41	53.42
TraesCS2A01G432100.2	Wheat	golgi, mitochondrion, plastid	69.41	53.42
CDY52948	Canola	golgi, mitochondrion	64.64	53.41
CDX82213	Canola	golgi, mitochondrion	64.64	53.12
TraesCS2D01G430000.2	Wheat	golgi	68.98	53.09
TraesCS2B01G453500.2	Wheat	golgi, mitochondrion, plastid	68.98	53.09
AT3G21160.1	Thale cress	golgi	64.86	52.27
CDY32409	Canola	golgi, mitochondrion	63.56	52.23
VIT_11s0052g00140.t01	Wine grape	golgi, mitochondrion	56.83	52.19
Bra001816.1-P	Field mustard	golgi, mitochondrion	64.64	52.19
CDY50074	Canola	golgi, mitochondrion, plastid	64.64	51.74
Bra031256.1-P	Field mustard	golgi, mitochondrion, plastid	64.43	51.3
CDY19581	Canola	golgi, mitochondrion, plastid	64.43	51.3
KRH02771	Soybean	golgi, plastid	62.47	49.57
Bra014291.1-P	Field mustard	mitochondrion	65.73	46.05
Zm00001d003736_P001	Maize	plastid	41.43	44.73
GSMUA_Achr10P...	Banana	golgi	37.09	28.36
GSMUA_Achr10P...	Banana	cytosol	15.62	25.26
GSMUA_Achr10P...	Banana	extracellular, golgi, mitochondrion, plastid	5.86	25.23
GSMUA_Achr6P14460_001	Banana	cytosol	37.74	23.8
GSMUA_Achr4P21040_001	Banana	extracellular, golgi	26.25	17.54
GSMUA_Achr4P12690_001	Banana	mitochondrion	1.52	4.09

Protein Annotations

KEGG:00510+3.2.1.113	KEGG:00513+3.2.1.113	Gene3D:1.50.10.10	MapMan:18.1.1.6.3	InterPro:6hp_glycosidase-like_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0004571	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016787	GO:GO:0016798	EnsemblPlantsGene:GSMUA_Achr4G12680_001	EnsemblPlants:GSMUA_Achr4P12680_001
EnsemblPlants:GSMUA_Achr4T12680_001	InterPro:Glyco_hydro_47	InterPro:IPR012341	UniProt:M0SND3	PFAM:PF01532	PRINTS:PR00747
PANTHER:PTHR11742	PANTHER:PTHR11742:SF42	SUPFAM:SSF48225	InterPro:Seven-hairpin_glycosidases	UniParc:UPI0002965548	:

Description

Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G12680_001]

Coordinates

chr4:-:9388191..9393373

Molecular Weight (calculated)

52389.3 Da

IEP (calculated)

6.253

GRAVY (calculated)

-0.301

Length

461 amino acids

Sequence
(BLAST)

001: MSTNKLSLPH VICTDGYLGV LALNCLLYFA ISFHHFRNRC PKKLSVYLIL FRIVQEWIAT SLDFNKDYEA SVFETTIRVV GGLLSAYDLS GDKIFLEKAR
101: DIADRLLPAW DTPTGIPYNR INLAHGHAHN FGWTGGQSIL ADSGTEQLEF IALSQRTGDP RYQQKAEKVI TQLQKTYPSD GLLPIYINPH SGVAASSSSI
201: TFGAMGDSYY EYLLKVWIQG NKTGTVKHYR EMWEISMEGL LSLIRKTTQS SLSYICEKTG DSLSNKMDEL ACFVPGMLVL GSSDYDPEKA EKFLSLAKEL
301: AWTCYNFYQS TPTKLAGENY YFNGGEDMNV GTSWNILRPE TVESLMYLWR FTGNKTYQDW GWNIFQAFEK NCRIDSGYVG LRDVKTGEKD NMMQSFFLAE
401: TLKYLYLLFS PPSLISFDEW VFNTEAHPLR IVTRKDGQDT EPTRISVAKP LGRKQGNEEQ N

Best Arabidopsis Sequence Match ( AT1G51590.1 )
(BLAST)

001: MARSRSISGY GIWKYLNPAY YLRRPRRLAL LFIVFVSVSM LVWDRINLAR EHEVEVFKLN EEVSRLEQML EELNGGVGNK PLKTLKDAPE DPVDKQRRQK
101: VKEAMIHAWS SYEKYAWGKD ELQPRTKDGT DSFGGLGATM VDSLDTLYIM GLDEQFQKAR EWVASSLDFD KDYDASMFET TIRVVGGLLS AYDLSGDKMF
201: LEKAKDIADR LLPAWNTPTG IPYNIINLRN GNAHNPSWAA GGDSILADSG TEQLEFIALS QRTGDPKYQQ KVEKVITELN KNFPADGLLP IYINPDNANP
301: SYSTTTFGAM GDSFYEYLLK VWVQGNKTSA VKPYRDMWEK SMKGLLSLVK KSTPSSFTYI CEKNGNNLID KMDELACFAP GMLALGASGY GPDEEKKFLS
401: LAGELAWTCY NFYQSTPTKL AGENYFFTAG QDMSVGTSWN ILRPETVESL FYLWRLTGNK TYQEWGWNIF QAFEKNSRVE SGYVGLKDVN TGAKDNKMQS
501: FFLAETLKYL YLLFSPSSVI SLDEWVFNTE AHPLKIVARN DPRKPTIALR QRKFGHQINV

Arabidopsis Description

MNS1Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C512]
SUBAcon: [mitochondrion,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.