Factsheet for VIT_10s0003g03280.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
golgi 3
mitochondrion 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	golgi
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11192	Soybean	endoplasmic reticulum	76.37	77.09
Bra010804.1-P	Field mustard	golgi	72.61	76.57
CDX90221	Canola	golgi	72.3	76.24
Solyc02g070520.2.1	Tomato	nucleus	74.65	75.83
KRH21064	Soybean	endoplasmic reticulum	75.12	75.71
CDY35266	Canola	golgi	71.52	74.92
Bra032351.1-P	Field mustard	golgi	71.99	74.55
CDY26300	Canola	golgi	71.99	74.55
CDX99872	Canola	golgi, plastid	71.83	74.39
GSMUA_Achr10P...	Banana	golgi	68.23	72.31
AT1G30000.2	Thale cress	extracellular, golgi, plasma membrane	70.11	69.57
EES19212	Sorghum	plastid	68.7	68.38
Zm00001d010454_P001	Maize	plasma membrane	67.76	67.45
HORVU1Hr1G029490.1	Barley	plastid	66.82	66.41
TraesCS1D01G127200.2	Wheat	plastid	66.82	66.41
Os05t0209100-01	Rice	cytosol, golgi, plastid	66.98	66.36
TraesCS1A01G126300.2	Wheat	plastid	67.29	65.85
TraesCS1B01G145500.1	Wheat	plastid	66.2	65.79
GSMUA_Achr6P14460_001	Banana	cytosol	71.52	62.52
VIT_09s0054g00310.t01	Wine grape	cytosol	5.95	41.3
VIT_09s0054g00230.t01	Wine grape	cytosol	21.13	39.36
VIT_11s0052g00150.t01	Wine grape	extracellular, golgi, vacuole	5.63	37.11
VIT_09s0054g00370.t01	Wine grape	golgi, mitochondrion	32.39	36.0
VIT_11s0052g00140.t01	Wine grape	golgi, mitochondrion	27.23	34.66
VIT_17s0000g07760.t01	Wine grape	extracellular, golgi	20.66	23.04
VIT_05s0020g04650.t01	Wine grape	endoplasmic reticulum	21.91	20.53

Protein Annotations

KEGG:00510+3.2.1.113	KEGG:00513+3.2.1.113	Gene3D:1.50.10.10	EntrezGene:100243430	wikigene:100243430	MapMan:19.1.1.1.3
InterPro:6hp_glycosidase-like_sf	ProteinID:CCB55788	ProteinID:CCB55788.1	UniProt:F6HLR4	EMBL:FN595992	GO:GO:0000139
GO:GO:0003674	GO:GO:0003824	GO:GO:0004571	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005794	GO:GO:0006491
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016798	GO:GO:0019538	InterPro:Glyco_hydro_47	InterPro:IPR012341	EntrezGene:LOC100243430	wikigene:LOC100243430
PFAM:PF01532	PRINTS:PR00747	PANTHER:PTHR11742	PANTHER:PTHR11742:SF55	SUPFAM:SSF48225	InterPro:Seven-hairpin_glycosidases
TMHMM:TMhelix	UniParc:UPI00019841E1	ArrayExpress:VIT_10s0003g03280	EnsemblPlantsGene:VIT_10s0003g03280	EnsemblPlants:VIT_10s0003g03280.t01	unigene:Vvi.10655
RefSeq:XP_002275664	RefSeq:XP_002275664.1	SEG:seg	:	:	:

Description

alpha-1,2-Mannosidase [Source:UniProtKB/TrEMBL;Acc:F6HLR4]

Coordinates

chr10:-:5456973..5468059

Molecular Weight (calculated)

71427.7 Da

IEP (calculated)

7.078

GRAVY (calculated)

-0.305

Length

639 amino acids

Sequence
(BLAST)

001: MSKSLPYSMK DVHYDNAKFR HRSCFKMITQ TMLTSNLKRD CISCSTGKFL VLLMIGGLAY LMLTNTSSGH SDSNGLAKGV IFKGGIKEGD KSIMDGGNRF
101: RRFWRKPPRL PPRLSPDEKG SNNSFIHDPV KLNADSIWIA RQQSVKKAFI HAWSGYKKYA MGFDELMPLS HRGVDGLGGL GATIVDALDT AMIMGADEVV
201: TEAGSWIETH LSHRIKEKGQ VNLFETTIRV LGGLLSAYHL SGGEQGMNST HMGPKSIVYL ETAKQLADLL LSAFTSSPTP IPFSDVVLRD HSAHPAPDGQ
301: SSTSEVSTLQ LEFNYLSTVS GDPKYGVEAM KVLEHLKTLP KVEGLVPIYI SPHSGEFNGE NIRLGSRGDS YYEYLIKVWL QQGAERDGNF KYLYDMYEEA
401: TKGIRHLLVQ KSIPKGLVFV GELPSGSKGA FSPKMDHLVC FLPGTLALGA TKGITKEKAM KDNLLTFEDL ENLKLAEDLA KTCFEMYSVT STGLAPEIAY
501: FHTEDYFEQG LDGGNKSSEY MNDIIIKYAD RHNLLRPETV ESLFVLYRIT ENPKYREWGW QIFEAFEKHT KVDSGGYSSL DDVTRLPPQR RDKMETFFLG
601: ETLKYLYLLF ADSTVIPLDK FVFNTEAHPF PIKGMSKSE

Best Arabidopsis Sequence Match ( AT1G30000.1 )
(BLAST)

001: MSKSLPYSVK DIHYDNAKFR HRSPLKVFSQ SLLTLSTKRN YASCSTGKFL ILILFFGVAC LMLMSKSPNE SGLNEKGKVT FVGGLRLGGL LRKPPRLPPR
101: LSPDEGQLRG SSTNGSTISN SDPKWAARQQ SVKEAFDHAW SGYRKYAMGY DELMPISQKG VDGLGGLGAT VVDALDTAMI MGLDNIVSEA GSWVETHLLE
201: RISQKGQVNL FETTIRVLGG LLSAYHLSGG EQGTVNMTHV GPKPVIYLNI AKDLADRLLS AFTSSPTPVP FCDVILHEST AHPAPGGASS TAEVASVQLE
301: FNYLSSISGD PKYSTEAMKV LAHIKTLPKT EGLVPIYISP QTGDFVGENI RLGSRGDSYY EYLIKVWLQQ GAKLNSNFTY LHDMYIEAMK GVRHLLVQNS
401: IPKGLVFVGE LPYGSKGEFS PKMDHLVCFL PGTLALGATK GLTKEQALKE NLLSFEDLEN LKLAEDLAKT CFEMYEVTAT GLAPEIAYFH TKDYTEDGLD
501: GGNKSSMYAN DIIIKPADRH NLLRPETVES LFVLYRITKD TKYRDQGWQI FEAFEKYTKV KSGGYTSLDD VTEVPPHRRD KMETFFLGET LKYLYLLFGD
601: DSVIPLDKFV FNTEAHPLPI RRNT

Arabidopsis Description

MNS3alpha-mannosidase 3 [Source:TAIR;Acc:AT1G30000]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.