Factsheet for VIT_09s0054g00370.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi

Predictor Summary:

plastid 2
golgi 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0072g01030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21160.1	VIT_18s0072g01030.t01	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0054g00230.t01	Wine grape	cytosol	53.22	89.21
PGSC0003DMT400023755	Potato	cytosol	37.74	82.82
KRH47289	Soybean	endoplasmic reticulum	79.83	79.69
KRH44626	Soybean	mitochondrion	79.3	78.89
Solyc03g123900.2.1	Tomato	extracellular, nucleus	79.13	78.58
VIT_09s0054g00310.t01	Wine grape	cytosol	12.17	76.09
Solyc06g063260.2.1	Tomato	golgi, mitochondrion	73.91	75.22
AT1G51590.1	Thale cress	golgi, mitochondrion	73.22	75.18
CDY55669	Canola	golgi, mitochondrion, plastid	72.17	73.97
Bra018917.1-P	Field mustard	golgi, mitochondrion, plastid	72.0	73.8
CDY22853	Canola	golgi, mitochondrion, plastid	71.83	73.62
CDY52948	Canola	golgi, mitochondrion	70.78	72.94
CDY46554	Canola	golgi, mitochondrion	70.96	72.86
VIT_11s0052g00140.t01	Wine grape	golgi, mitochondrion	63.3	72.51
AT3G21160.1	Thale cress	golgi	71.3	71.68
Bra031256.1-P	Field mustard	golgi, mitochondrion, plastid	71.65	71.16
CDY50074	Canola	golgi, mitochondrion, plastid	71.13	71.01
CDX82213	Canola	golgi, mitochondrion	69.04	70.77
CDY19581	Canola	golgi, mitochondrion, plastid	70.96	70.47
CDY32409	Canola	golgi, mitochondrion	68.52	70.23
Bra001816.1-P	Field mustard	golgi, mitochondrion	69.74	70.23
Bra014291.1-P	Field mustard	mitochondrion	71.65	62.61
VIT_11s0052g00150.t01	Wine grape	extracellular, golgi, vacuole	9.57	56.7
VIT_10s0003g03280.t01	Wine grape	cytosol	36.0	32.39
VIT_17s0000g07760.t01	Wine grape	extracellular, golgi	23.65	23.73
VIT_05s0020g04650.t01	Wine grape	endoplasmic reticulum	24.17	20.38

Protein Annotations

KEGG:00510+3.2.1.113	KEGG:00513+3.2.1.113	Gene3D:1.50.10.10	EntrezGene:100852827	wikigene:100852827	MapMan:18.1.1.6.3
InterPro:6hp_glycosidase-like_sf	ProteinID:CBI18472	ProteinID:CBI18472.3	ncoils:Coil	UniProt:D7SS40	EMBL:FN594972
GO:GO:0000139	GO:GO:0003674	GO:GO:0003824	GO:GO:0004571	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005794
GO:GO:0006491	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016787
GO:GO:0016798	GO:GO:0019538	InterPro:Glyco_hydro_47	InterPro:IPR012341	EntrezGene:LOC100852827	wikigene:LOC100852827
PFAM:PF01532	PRINTS:PR00747	PANTHER:PTHR11742	PANTHER:PTHR11742:SF42	SUPFAM:SSF48225	InterPro:Seven-hairpin_glycosidases
TIGR:TC56274	TIGR:TC69927	TMHMM:TMhelix	UniParc:UPI0001BE1298	ArrayExpress:VIT_09s0054g00370	EnsemblPlantsGene:VIT_09s0054g00370
EnsemblPlants:VIT_09s0054g00370.t01	unigene:Vvi.2232	RefSeq:XP_003632926	RefSeq:XP_003632926.1	SEG:seg	:

Description

alpha-1,2-Mannosidase [Source:UniProtKB/TrEMBL;Acc:D7SS40]

Coordinates

chr9:-:20876871..20897935

Molecular Weight (calculated)

65196.1 Da

IEP (calculated)

6.371

GRAVY (calculated)

-0.428

Length

575 amino acids

Sequence
(BLAST)

001: MARARSSASR WRYCNPSYYL KRPKRLALLF IAFVCVSFLV WDRQTLVREQ EIEVASLKAE LTHLQDLLDE LKSIGGNAGG VSGRNGKSSK KSTVPDDPID
101: IQRREKVKDA MLHAWSSYEK YAWGQDELQP QSKNGVNSFG GLGATLIDSL DTLYIMGLDE QFQRAREWVA NSLDFNKNYE ASVFETTIRV VGGLLSAYDL
201: SEDKLFLEKA RDIADRLLPA WNTPSGIPYN IINLAHGNAH NPGWTGGDSI LADSGTEQLE FIALSQRTGD PKYQKKVENV IIELNKTFPA DGLLPIYINP
301: HRGTSSYSTI TFGAMGDSFY EYLLKVWIQG NKTAAVKHYR EMWETSMKGL LSLVRRTTPS SFTYICEKNG DSLHDKMDEL ACFAPGMIAL GSLGYGPEES
401: QKFLSLAEEL AWTCYNFYQS TPTKLAGENY FFHSGQDMSV GTSWNILRPE TVESLFYLWR LTGNKTYQEW GWNIFQAFEK NSRIESGYVG LKDVNSGVKD
501: NMMQSFFLAE TLKYLYLLFS PSTVISLDEW VFNTEAHPIR IMTRHDNGEN LGGSDGQQKQ FYRLRGRKEG RRVDD

Best Arabidopsis Sequence Match ( AT1G51590.1 )
(BLAST)

001: MARSRSISGY GIWKYLNPAY YLRRPRRLAL LFIVFVSVSM LVWDRINLAR EHEVEVFKLN EEVSRLEQML EELNGGVGNK PLKTLKDAPE DPVDKQRRQK
101: VKEAMIHAWS SYEKYAWGKD ELQPRTKDGT DSFGGLGATM VDSLDTLYIM GLDEQFQKAR EWVASSLDFD KDYDASMFET TIRVVGGLLS AYDLSGDKMF
201: LEKAKDIADR LLPAWNTPTG IPYNIINLRN GNAHNPSWAA GGDSILADSG TEQLEFIALS QRTGDPKYQQ KVEKVITELN KNFPADGLLP IYINPDNANP
301: SYSTTTFGAM GDSFYEYLLK VWVQGNKTSA VKPYRDMWEK SMKGLLSLVK KSTPSSFTYI CEKNGNNLID KMDELACFAP GMLALGASGY GPDEEKKFLS
401: LAGELAWTCY NFYQSTPTKL AGENYFFTAG QDMSVGTSWN ILRPETVESL FYLWRLTGNK TYQEWGWNIF QAFEKNSRVE SGYVGLKDVN TGAKDNKMQS
501: FFLAETLKYL YLLFSPSSVI SLDEWVFNTE AHPLKIVARN DPRKPTIALR QRKFGHQINV

Arabidopsis Description

MNS1Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C512]
SUBAcon: [mitochondrion,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.