Factsheet for PGSC0003DMT400023755

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 1
cytosol 2
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002331
PGSC0003DMT400067082

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21160.1	PGSC0003DMT400002331	AT4G09570.1	19130088
AT3G21160.1	PGSC0003DMT400067082	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0054g00310.t01	Wine grape	cytosol	25.19	71.74
VIT_09s0054g00230.t01	Wine grape	cytosol	77.86	59.48
Solyc03g123900.2.1	Tomato	extracellular, nucleus	98.47	44.56
VIT_09s0054g00370.t01	Wine grape	golgi, mitochondrion	82.82	37.74
AT1G51590.1	Thale cress	golgi, mitochondrion	77.86	36.43
CDY55669	Canola	golgi, mitochondrion, plastid	76.72	35.83
CDY22853	Canola	golgi, mitochondrion, plastid	76.34	35.65
KRH47289	Soybean	endoplasmic reticulum	78.24	35.59
Bra018917.1-P	Field mustard	golgi, mitochondrion, plastid	75.95	35.47
CDY46554	Canola	golgi, mitochondrion	75.57	35.36
AT3G21160.1	Thale cress	golgi	75.95	34.79
KRH44626	Soybean	mitochondrion	76.72	34.78
CDY52948	Canola	golgi, mitochondrion	73.66	34.59
CDY50074	Canola	golgi, mitochondrion, plastid	75.19	34.2
CDY19581	Canola	golgi, mitochondrion, plastid	75.19	34.02
Bra031256.1-P	Field mustard	golgi, mitochondrion, plastid	74.81	33.85
CDX82213	Canola	golgi, mitochondrion	71.76	33.51
Bra001816.1-P	Field mustard	golgi, mitochondrion	72.52	33.27
CDY32409	Canola	golgi, mitochondrion	70.99	33.16
Bra014291.1-P	Field mustard	mitochondrion	75.57	30.09
PGSC0003DMT400062874	Potato	cytosol	20.61	18.37
PGSC0003DMT400041971	Potato	extracellular, golgi	17.94	15.02
PGSC0003DMT400062870	Potato	golgi, plasma membrane	1.15	1.06

Protein Annotations

KEGG:00510+3.2.1.113	KEGG:00513+3.2.1.113	Gene3D:1.50.10.10	MapMan:18.1.1.6.3	InterPro:6hp_glycosidase-like_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0004571	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_47	InterPro:IPR012341
UniProt:M1AIX9	PFAM:PF01532	EnsemblPlantsGene:PGSC0003DMG402009189	PGSC:PGSC0003DMG402009189	EnsemblPlants:PGSC0003DMT400023755	PRINTS:PR00747
PANTHER:PTHR11742	PANTHER:PTHR11742:SF42	SUPFAM:SSF48225	InterPro:Seven-hairpin_glycosidases	UniParc:UPI0002969085	:

Description

Mannosyl-oligosaccharide alpha-1,2-mannosidase [Source:PGSC_GENE;Acc:PGSC0003DMG402009189]

Coordinates

chr3:-:61932466..61939652

Molecular Weight (calculated)

30014.4 Da

IEP (calculated)

7.556

GRAVY (calculated)

-0.443

Length

262 amino acids

Sequence
(BLAST)

001: MGDSFYEYLL KVWIQGNRTA AVSHYRKMWE TSMKGLVSLV RRTTPSSFAY LGEKMGSSIN DKMDELACFA PGMLALGSSG YSPDEAQKFL SLAEELAWTC
101: YNFYQSTPTK LAGENYFFND GQDMSVGTSW NILRPETVES LFYLWRLTGN KTYQEWGWNI FQAFEKNSRV ESGYVGLKDV NTGVKDNMMQ SFFLAETLKY
201: LYLLFSPSSV IPLDEWVFNT EAHPIKIVTR NDRAVSSGRS GGSQESDRQL RTRKEGRFRV HH

Best Arabidopsis Sequence Match ( AT1G51590.1 )
(BLAST)

001: MARSRSISGY GIWKYLNPAY YLRRPRRLAL LFIVFVSVSM LVWDRINLAR EHEVEVFKLN EEVSRLEQML EELNGGVGNK PLKTLKDAPE DPVDKQRRQK
101: VKEAMIHAWS SYEKYAWGKD ELQPRTKDGT DSFGGLGATM VDSLDTLYIM GLDEQFQKAR EWVASSLDFD KDYDASMFET TIRVVGGLLS AYDLSGDKMF
201: LEKAKDIADR LLPAWNTPTG IPYNIINLRN GNAHNPSWAA GGDSILADSG TEQLEFIALS QRTGDPKYQQ KVEKVITELN KNFPADGLLP IYINPDNANP
301: SYSTTTFGAM GDSFYEYLLK VWVQGNKTSA VKPYRDMWEK SMKGLLSLVK KSTPSSFTYI CEKNGNNLID KMDELACFAP GMLALGASGY GPDEEKKFLS
401: LAGELAWTCY NFYQSTPTKL AGENYFFTAG QDMSVGTSWN ILRPETVESL FYLWRLTGNK TYQEWGWNIF QAFEKNSRVE SGYVGLKDVN TGAKDNKMQS
501: FFLAETLKYL YLLFSPSSVI SLDEWVFNTE AHPLKIVARN DPRKPTIALR QRKFGHQINV

Arabidopsis Description

MNS1Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C512]
SUBAcon: [mitochondrion,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.