Factsheet for PGSC0003DMT400062874

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	extracellular, golgi, mitochondrion, plastid	26.53	72.9
Solyc03g113900.2.1	Tomato	golgi	97.62	49.65
VIT_17s0000g07760.t01	Wine grape	extracellular, golgi	75.51	38.74
KRH03356	Soybean	endoplasmic reticulum, golgi	74.83	38.46
HORVU6Hr1G076440.3	Barley	extracellular, plastid	67.01	35.62
AT1G27520.1	Thale cress	golgi	69.05	35.37
EES05547	Sorghum	endoplasmic reticulum, golgi	69.05	35.06
TraesCS6A01G309800.1	Wheat	endoplasmic reticulum, golgi	68.71	34.77
Os02t0741300-01	Rice	mitochondrion	68.71	34.53
CDY27620	Canola	endoplasmic reticulum, golgi, vacuole	67.01	34.5
TraesCS6D01G289200.1	Wheat	endoplasmic reticulum	68.03	34.48
TraesCS6B01G339600.1	Wheat	endoplasmic reticulum	67.69	34.31
Bra032833.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	66.33	34.15
Zm00001d017997_P010	Maize	golgi	67.01	33.62
CDX84922	Canola	cytosol	67.69	30.62
PGSC0003DMT400041971	Potato	extracellular, golgi	29.59	27.8
PGSC0003DMT400023755	Potato	cytosol	18.37	20.61
GSMUA_Achr10P...	Banana	cytosol	7.48	7.72
KRH57025	Soybean	extracellular	1.02	1.48
PGSC0003DMT400062870	Potato	golgi, plasma membrane	1.02	1.06

Protein Annotations

KEGG:00510+3.2.1.113	KEGG:00513+3.2.1.113	Gene3D:1.50.10.10	MapMan:50.3.2	InterPro:6hp_glycosidase-like_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0004571	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_47	InterPro:IPR012341
UniProt:M1C9P6	PFAM:PF01532	EnsemblPlantsGene:PGSC0003DMG402024473	PGSC:PGSC0003DMG402024473	EnsemblPlants:PGSC0003DMT400062874	PRINTS:PR00747
PANTHER:PTHR11742	PANTHER:PTHR11742:SF44	SUPFAM:SSF48225	InterPro:Seven-hairpin_glycosidases	UniParc:UPI0002953208	SEG:seg

Description

Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG402024473]

Coordinates

chr3:+:53734245..53736806

Molecular Weight (calculated)

34094.5 Da

IEP (calculated)

8.029

GRAVY (calculated)

-0.462

Length

294 amino acids

Sequence
(BLAST)

001: MKAYVLFGRD EIWKMFQSAY IGVQKYFRHS PWYHEADMRT GTATYWQLTS LQAFWPGLQV LVGDIEAANS SHREFFKVWK KYGVLPERYL LDHQVLHPTE
101: KYYPLRPELA ESTFYLYQAT KDPWYMEVGE SIMNSLNAHT RVKGGFASIR DVTTMQLEDH QHSFFLAETC KYLYLLFDDS FLLNKNYIFT TEGHPLPVRS
201: NWHEKLPKAY NLSNGSSIKT GKQRKRSSAM SLQICPASMI HHEPNARRLE SACHIPDTGA DHRCFSDDDC GVDANTCRRR SCSLAGYCGL WSLI

Best Arabidopsis Sequence Match ( AT1G27520.1 )
(BLAST)

001: MSCPIHPRRL FLCLLISLTF FVVDPSSQHI EVKKKQMREK VREMFYHAYD NYMTYAFPHD ELKPLTKSFT DSLSELGNLK LEHLPTDYNG SAVTLVESLS
101: SLAILGNSTE FEKGVLWLSE NLTFDIDARV NLFECNIRVL GGLISAHLLA IDPNNRLIQG SYNNQLLRLA EDLGKRFLPA FETPTGLPYA WINLKNGVME
201: NETTETSTSG CGSLVLEMGA LSRLTGDPRF ESAALRALRQ LWRMRSSLDL LGTTLDVVTG EWIEYSSSIG AGVDSFYEYL LKAYILFGKE DYWRMFHSAY
301: LASQKYFRHG PWYHEANMWS GKPTYWQLTS LQAFWPGLQV LVGDIAAANS SHREFFHVWE KFGVLPERYL LDHQIIHPTM KYYPLRPELA ESTFYLYQAT
401: KDPWYLDVGE SMVKSLNLYT KVPGGFASVR DVTTMQLEDH QHSFFLAETC KYLYLLFDDS FVAKRNYIFT TEGHPIQVVS SWHEKLPETY FSGNWTLSKS
501: GAWESRASAL SLQVCPLISL NSRHPEQQRE SACHVLDEQI NHKCWSNKEC GVDATTCRLR TCSGVGYCGL WNPL

Arabidopsis Description

MNS5Alpha-mannosidase I MNS5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXC9]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.