CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
extracellular 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	extracellular, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	extracellular
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35438	Canola	mitochondrion, nucleus, vacuole	94.46	96.14
CDY22480	Canola	vacuole	48.4	72.49
CDY35439	Canola	extracellular, vacuole	65.01	66.97
AT2G40815.1	Thale cress	extracellular, plasma membrane, plastid	69.1	64.58
CDY22481	Canola	cytosol, extracellular, nucleus	39.07	59.82
Solyc03g095300.2.1	Tomato	mitochondrion	22.45	53.47
PGSC0003DMT400013484	Potato	cytosol, golgi, mitochondrion, nucleus	42.57	45.77
VIT_13s0067g00140.t01	Wine grape	extracellular, mitochondrion, nucleus, plasma membrane	42.86	45.51
KRH16945	Soybean	mitochondrion	40.23	44.09
KRH72560	Soybean	mitochondrion	41.4	43.83
TraesCS3B01G373600.1	Wheat	mitochondrion	34.99	38.46
TraesCS3A01G341500.1	Wheat	mitochondrion	34.99	38.46
TraesCS3D01G335200.1	Wheat	mitochondrion	34.69	38.14
GSMUA_Achr7P21910_001	Banana	mitochondrion	34.99	37.5
KRH64243	Soybean	extracellular, plasma membrane	35.57	36.64
KRH53687	Soybean	plasma membrane	35.57	36.64
EES01658	Sorghum	mitochondrion	32.94	36.22
Os01t0818100-00	Rice	mitochondrion	31.78	35.16
Zm00001d043082_P001	Maize	nucleus, peroxisome, plastid	31.49	34.29

Protein Annotations

EnsemblPlants:CDY22482	EnsemblPlantsGene:GSBRNA2T00019042001	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:IPR000008
InterPro:IPR035892	PANTHER:PTHR32246	PANTHER:PTHR32246:SF15	ProteinID:CDY22482	ProteinID:CDY22482.1	SEG:seg
SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI0004EF15AF	UniProt:A0A078GBN5	MapMan:35.2	:

Description

BnaC03g22920DBnaC03g22920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBN5]

Coordinates

chrLK032132:-:107783..109336

Molecular Weight (calculated)

36738.0 Da

IEP (calculated)

8.178

GRAVY (calculated)

-0.473

Length

343 amino acids

Sequence
(BLAST)

001: MGKTLIEICL ISARGLRVGT GFGSSLLKHQ WYAVGWIDPE SKYCTTIDAS RSDNPLWRTK FAALLDDGDD DDDDSKIQAL HVEVYSREPI FLRKKLHGSA
101: TVSLKEFLAK YKKHSSVVEE TGSYQLRKVN SSKAQGFVDV SIRVSAERQD FGGFTGDFGG VMLSNNSGYN NTSGQNYMSG SSQHPFASLN QPSNPKPFSV
201: QPDKHHSPMP NPLTNNASPQ MQQPYYPPPP PMQQPYYPPP PPATSNAGYM PSYIPRSENA VNIPSSSSSG GAGRGYTRPG PGGSAGLGAG AIVGAAAAFY
301: GRDYLSGGFD LPTSLSLPNV SIPNISLPNV SIPNGSISID PPF

Best Arabidopsis Sequence Match ( AT2G40815.2 )
(BLAST)

001: MGKILVEICM ISARGLRVGI GIGSSLLKHQ WYAVGWLDPE DKYCTTIDAS RADNPVWRTK FATLLDDSTI QDSKLALQVE VYSREPLFLR KRLHGSATVS
101: LKEFLTKYKQ QQSSSKAVIE ETGSYQLRKT NSSKPQGFVD VSIRISAERE DFGGFTGDFG GVMLSNNSDY NTSGQDYMAG SSQYPFAPMD QSNPFSVPPS
201: YNHHSSMPNP PMTNTNPQMQ QPYYPPPMQP PPPPMNSGYM PTYIPNSENV TNIPSSSSSG GVPGGAGRGY ARTGPGFAVG VGAGAVVGAG AALYGSEFMS
301: GIDLPSSLPH PSVPISIDPP F

Arabidopsis Description

Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:F4IIZ8]
SUBAcon: [plasma membrane,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.