Factsheet for VIT_13s0067g00140.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, extracellular, nucleus

Predictor Summary:

nucleus 4
plastid 1
extracellular 1
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013484	Potato	cytosol, golgi, mitochondrion, nucleus	66.56	67.4
Solyc03g095300.2.1	Tomato	mitochondrion	29.1	65.28
KRH72560	Soybean	mitochondrion	56.35	56.17
KRH16945	Soybean	mitochondrion	52.94	54.63
KRH64243	Soybean	extracellular, plasma membrane	55.73	54.05
KRH53687	Soybean	plasma membrane	54.8	53.15
GSMUA_Achr7P21910_001	Banana	mitochondrion	52.32	52.81
CDY22480	Canola	vacuole	35.29	49.78
TraesCS3B01G373600.1	Wheat	mitochondrion	47.06	48.72
TraesCS3A01G341500.1	Wheat	mitochondrion	47.06	48.72
TraesCS3D01G335200.1	Wheat	mitochondrion	46.44	48.08
Os01t0818100-00	Rice	mitochondrion	44.89	46.77
EES01658	Sorghum	mitochondrion	43.03	44.55
CDY35438	Canola	mitochondrion, nucleus, vacuole	45.51	43.62
Bra000206.1-P	Field mustard	cytosol, nucleus, vacuole	45.51	43.49
Zm00001d043082_P001	Maize	nucleus, peroxisome, plastid	42.11	43.17
CDY22482	Canola	mitochondrion	45.51	42.86
AT2G40815.1	Thale cress	extracellular, plasma membrane, plastid	48.61	42.78
CDY35439	Canola	extracellular, vacuole	41.18	39.94
Bra000205.1-P	Field mustard	extracellular	40.56	39.34
CDY22481	Canola	cytosol, extracellular, nucleus	26.93	38.84

Protein Annotations

EntrezGene:100248425	wikigene:100248425	Gene3D:2.60.40.150	MapMan:35.2	InterPro:C2_dom	InterPro:C2_domain_sf
ProteinID:CBI25519	ProteinID:CBI25519.3	UniProt:D7T4T7	EMBL:FN595514	InterPro:IPR000008	InterPro:IPR035892
EntrezGene:LOC100248425	wikigene:LOC100248425	PFAM:PF00168	PANTHER:PTHR32246	PANTHER:PTHR32246:SF15	SUPFAM:SSF49562
TIGR:TC58928	UniParc:UPI00015CB055	ArrayExpress:VIT_13s0067g00140	EnsemblPlantsGene:VIT_13s0067g00140	EnsemblPlants:VIT_13s0067g00140.t01	RefSeq:XP_002266989
RefSeq:XP_002266989.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:+:106656..107987

Molecular Weight (calculated)

34813.9 Da

IEP (calculated)

6.682

GRAVY (calculated)

-0.468

Length

323 amino acids

Sequence
(BLAST)

001: MGKIWIEVCL ISARGLQRSS LWKLQWFAVG WVDPNNKYCT KIDASGNANP VWKTKFSTLV DDSESKFQDL ALYVEVYSRE PIFLREKLQG TATVNLKEFL
101: AKHIKNSEAS KPGTQDVGSF QLRKRKSSKP HGFVDISIRI SEEREEPDSY SGKEEGFELM DHSSGITLAP ADASTQAYPP QRPLAPLGQP QNPPQTNFPY
201: SHPMPFPTNN SNPALGGPSY PSAGGTSYPP PRSPPPPPPP PPSNVGYIPT FLPRTDHLPG TYVNMPPSGS GAGSSRGPGF GMGVGAGALA AGAVIFGDDF
301: MSGFDFPTGL QDASLTISTD PLF

Best Arabidopsis Sequence Match ( AT2G40815.2 )
(BLAST)

001: MGKILVEICM ISARGLRVGI GIGSSLLKHQ WYAVGWLDPE DKYCTTIDAS RADNPVWRTK FATLLDDSTI QDSKLALQVE VYSREPLFLR KRLHGSATVS
101: LKEFLTKYKQ QQSSSKAVIE ETGSYQLRKT NSSKPQGFVD VSIRISAERE DFGGFTGDFG GVMLSNNSDY NTSGQDYMAG SSQYPFAPMD QSNPFSVPPS
201: YNHHSSMPNP PMTNTNPQMQ QPYYPPPMQP PPPPMNSGYM PTYIPNSENV TNIPSSSSSG GVPGGAGRGY ARTGPGFAVG VGAGAVVGAG AALYGSEFMS
301: GIDLPSSLPH PSVPISIDPP F

Arabidopsis Description

Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:F4IIZ8]
SUBAcon: [plasma membrane,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.