Factsheet for PGSC0003DMT400013484

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
vacuole 1
plasma membrane 1
mitochondrion 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g095300.2.1	Tomato	mitochondrion	37.62	83.33
VIT_13s0067g00140.t01	Wine grape	extracellular, mitochondrion, nucleus, plasma membrane	67.4	66.56
KRH72560	Soybean	mitochondrion	56.11	55.25
KRH16945	Soybean	mitochondrion	53.29	54.31
KRH64243	Soybean	extracellular, plasma membrane	54.23	51.95
KRH53687	Soybean	plasma membrane	53.29	51.05
GSMUA_Achr7P21910_001	Banana	mitochondrion	49.53	49.38
CDY22480	Canola	vacuole	34.48	48.03
TraesCS3B01G373600.1	Wheat	mitochondrion	43.26	44.23
TraesCS3A01G341500.1	Wheat	mitochondrion	42.95	43.91
TraesCS3D01G335200.1	Wheat	mitochondrion	42.63	43.59
Bra000206.1-P	Field mustard	cytosol, nucleus, vacuole	45.77	43.2
CDY35438	Canola	mitochondrion, nucleus, vacuole	45.45	43.03
CDY22482	Canola	mitochondrion	45.77	42.57
Os01t0818100-00	Rice	mitochondrion	40.75	41.94
AT2G40815.1	Thale cress	extracellular, plasma membrane, plastid	47.65	41.42
EES01658	Sorghum	mitochondrion	39.81	40.71
Zm00001d043082_P001	Maize	nucleus, peroxisome, plastid	38.87	39.37
CDY35439	Canola	extracellular, vacuole	39.5	37.84
Bra000205.1-P	Field mustard	extracellular	38.56	36.94
CDY22481	Canola	cytosol, extracellular, nucleus	25.71	36.61

Protein Annotations

EnsemblPlants:PGSC0003DMT400013484	EnsemblPlantsGene:PGSC0003DMG400005260	EntrezGene:102591162	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf
InterPro:IPR000008	InterPro:IPR035892	PANTHER:PTHR32246	PANTHER:PTHR32246:SF15	PFAM:PF00168	PGSC:PGSC0003DMG400005260
RefSeq:XP_006358166.1	SEG:seg	SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI000296E12D	UniProt:M1A2W8
MapMan:35.2	:	:	:	:	:

Description

Proline-rich family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005260]

Coordinates

chr3:+:36526877..36535958

Molecular Weight (calculated)

35000.5 Da

IEP (calculated)

8.569

GRAVY (calculated)

-0.456

Length

319 amino acids

Sequence
(BLAST)

001: MGKIWIEICL ISARGLRRTS ALWKLQWYAV GWIDPNNKYC SKIDSSGNAN PVWKTKFSML VDTSLQDLAL NVEVYSREPI FLREKLMGTA TVLLKEFLDK
101: YNKNSEVSKP IEEVGSFQLR KKNSNKPQGF IDVSIRVSEE REESSSQPGE KEGFKLADNS SGFNLTNGYK PASAYLQPQS LTPSQMLESQ SQTNHQYAHP
201: VPYPTNYSHP PVAGPSYTQA AGPSYQPPRT PPPPPPPPAN VGYIPTFLPR TNNMLPSYLN MPQTGTSAAR NARPGFGMGV GAGALAAGAM IFGDDFMSGF
301: DLPHGLQDPS LTISLDPLV

Best Arabidopsis Sequence Match ( AT2G40815.2 )
(BLAST)

001: MGKILVEICM ISARGLRVGI GIGSSLLKHQ WYAVGWLDPE DKYCTTIDAS RADNPVWRTK FATLLDDSTI QDSKLALQVE VYSREPLFLR KRLHGSATVS
101: LKEFLTKYKQ QQSSSKAVIE ETGSYQLRKT NSSKPQGFVD VSIRISAERE DFGGFTGDFG GVMLSNNSDY NTSGQDYMAG SSQYPFAPMD QSNPFSVPPS
201: YNHHSSMPNP PMTNTNPQMQ QPYYPPPMQP PPPPMNSGYM PTYIPNSENV TNIPSSSSSG GVPGGAGRGY ARTGPGFAVG VGAGAVVGAG AALYGSEFMS
301: GIDLPSSLPH PSVPISIDPP F

Arabidopsis Description

Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:F4IIZ8]
SUBAcon: [plasma membrane,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.