Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026218.1-P | Field mustard | cytosol, mitochondrion, nucleus | 100.0 | 100.0 |
| CDY39310 | Canola | cytosol, mitochondrion, nucleus | 100.0 | 100.0 |
| CDX84028 | Canola | cytosol | 90.54 | 90.54 |
| CDY09364 | Canola | cytosol | 77.03 | 80.28 |
| CDY15839 | Canola | nucleus | 77.03 | 79.17 |
| AT1G14450.2 | Thale cress | mitochondrion | 93.24 | 71.13 |
| Solyc01g102830.2.1 | Tomato | cytosol | 64.86 | 67.61 |
| PGSC0003DMT400047010 | Potato | cytosol | 64.86 | 67.61 |
| VIT_12s0035g01940.t01 | Wine grape | cytosol | 60.81 | 64.29 |
| GSMUA_Achr3P16720_001 | Banana | cytosol | 56.76 | 63.64 |
| GSMUA_Achr6P28850_001 | Banana | cytosol | 56.76 | 63.64 |
| GSMUA_Achr8P29080_001 | Banana | cytosol, mitochondrion | 55.41 | 62.12 |
| Os02t0564200-01 | Rice | mitochondrion | 51.35 | 57.58 |
| EES05275 | Sorghum | cytosol | 51.35 | 57.58 |
| Zm00001d016864_P001 | Maize | mitochondrion | 51.35 | 56.72 |
| TraesCS6A01G198900.1 | Wheat | cytosol | 50.0 | 55.22 |
| TraesCS6D01G180900.1 | Wheat | cytosol | 50.0 | 55.22 |
| TraesCS6B01G221500.1 | Wheat | cytosol | 48.65 | 53.73 |
| TraesCS6B01G115500.1 | Wheat | cytosol | 48.65 | 52.17 |
| KRH01881 | Soybean | cytosol | 55.41 | 48.81 |
| Os07t0175750-00 | Rice | mitochondrion | 28.38 | 44.68 |
| HORVU6Hr1G015900.1 | Barley | extracellular | 50.0 | 40.22 |
| Zm00001d053339_P001 | Maize | mitochondrion | 35.14 | 31.33 |
| Zm00001d053278_P001 | Maize | mitochondrion | 33.78 | 19.23 |
| Zm00001d035942_P001 | Maize | mitochondrion | 35.14 | 16.99 |
Protein Annotations
| MapMan:2.4.1.4.2.2 | GO:A0A078I7X8 | UniProt:A0A078I7X8 | ProteinID:CDY39310.1 | EnsemblPlants:CDY45258 | ProteinID:CDY45258 |
| ProteinID:CDY45258.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 |
| GO:GO:0005747 | GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0022900 | EnsemblPlantsGene:GSBRNA2T00081699001 | InterPro:NDUFB3 | PFAM:PF08122 | PANTHER:PTHR15082 |
| TMHMM:TMhelix | UniParc:UPI000253E753 | : | : | : | : |
Description
BnaA06g09280DBnaA06g09280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I7X8]
Coordinates
chrLK032619:-:21979..22250
Molecular Weight (calculated)
8257.0 Da
IEP (calculated)
10.733
GRAVY (calculated)
-0.566
Length
74 amino acids
Sequence
(BLAST)
(BLAST)
1: MAKPLGTTGE FFRRRDEWRK HPMLSNQMRH ALPGLGIGVA AFCVYLVGEQ IYSKALAPSK SSSHHNQKQP APSH
1: MAKPLGTTGE FFRRRDEWRK HPMLSNQMRH ALPGLGIGVA AFCVYLVGEQ IYNKALAPSK SSHHHQEQTA PSH
Arabidopsis Description
NADH dehydrogenase (ubiquinone)s [Source:TAIR;Acc:AT1G14450]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.