Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G198900.1 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCS6B01G221500.1 | Wheat | cytosol | 97.01 | 97.01 |
| Zm00001d016864_P001 | Maize | mitochondrion | 95.52 | 95.52 |
| EES05275 | Sorghum | cytosol | 91.04 | 92.42 |
| Os02t0564200-01 | Rice | mitochondrion | 89.55 | 90.91 |
| Os07t0175750-00 | Rice | mitochondrion | 56.72 | 80.85 |
| GSMUA_Achr8P29080_001 | Banana | cytosol, mitochondrion | 68.66 | 69.7 |
| HORVU6Hr1G015900.1 | Barley | extracellular | 94.03 | 68.48 |
| GSMUA_Achr3P16720_001 | Banana | cytosol | 67.16 | 68.18 |
| VIT_12s0035g01940.t01 | Wine grape | cytosol | 70.15 | 67.14 |
| GSMUA_Achr6P28850_001 | Banana | cytosol | 65.67 | 66.67 |
| PGSC0003DMT400047010 | Potato | cytosol | 61.19 | 57.75 |
| Solyc01g102830.2.1 | Tomato | cytosol | 61.19 | 57.75 |
| KRH01881 | Soybean | cytosol | 67.16 | 53.57 |
| CDY09364 | Canola | cytosol | 56.72 | 53.52 |
| CDY15839 | Canola | nucleus | 56.72 | 52.78 |
| Bra026590.1-P | Field mustard | nucleus | 56.72 | 52.78 |
| AT2G02510.1 | Thale cress | cytosol, golgi, nucleus | 55.22 | 51.39 |
| CDY45258 | Canola | cytosol, mitochondrion, nucleus | 55.22 | 50.0 |
| CDY39310 | Canola | cytosol, mitochondrion, nucleus | 55.22 | 50.0 |
| CDX84028 | Canola | cytosol | 55.22 | 50.0 |
| Bra026218.1-P | Field mustard | cytosol, mitochondrion, nucleus | 55.22 | 50.0 |
| AT1G14450.2 | Thale cress | mitochondrion | 59.7 | 41.24 |
| Bra026829.1-P | Field mustard | nucleus | 35.82 | 35.82 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G180900.1 | EnsemblPlantsGene:TraesCS6D01G180900 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005739 | GO:GO:0005747 | GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0022900 | InterPro:NDUFB3 | PANTHER:PTHR15082 | TMHMM:TMhelix | MapMan:2.4.1.4.2.2 |
Description
No Description!
Coordinates
chr6D:-:202265609..202265812
Molecular Weight (calculated)
7490.0 Da
IEP (calculated)
10.944
GRAVY (calculated)
-0.521
Length
67 amino acids
Sequence
(BLAST)
(BLAST)
1: MAKGGKGLNA TGEFFRRRDE WRRHPMVGNQ LRHATPGLGI AIVAFGIYLV GEAAYNRLYR PAGDNHH
1: MICHLRRKLR GIVRSQEINR IPEKMAKPLG TTGEFFRRRD EWRKHPMLSN QMRHALPGLG IGVAAFCVYL VGEQIYNKAL APSKSSHHHQ EQTAPSH
Arabidopsis Description
NADH dehydrogenase (ubiquinone)s [Source:TAIR;Acc:AT1G14450]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.