Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P16720_001 | Banana | cytosol | 89.39 | 89.39 |
| GSMUA_Achr8P29080_001 | Banana | cytosol, mitochondrion | 87.88 | 87.88 |
| EES05275 | Sorghum | cytosol | 66.67 | 66.67 |
| VIT_12s0035g01940.t01 | Wine grape | cytosol | 69.7 | 65.71 |
| TraesCS6A01G198900.1 | Wheat | cytosol | 66.67 | 65.67 |
| TraesCS6D01G180900.1 | Wheat | cytosol | 66.67 | 65.67 |
| Zm00001d016864_P001 | Maize | mitochondrion | 66.67 | 65.67 |
| Os02t0564200-01 | Rice | mitochondrion | 65.15 | 65.15 |
| TraesCS6B01G221500.1 | Wheat | cytosol | 65.15 | 64.18 |
| TraesCS6B01G115500.1 | Wheat | cytosol | 63.64 | 60.87 |
| CDY09364 | Canola | cytosol | 63.64 | 59.15 |
| CDY15839 | Canola | nucleus | 63.64 | 58.33 |
| Bra026590.1-P | Field mustard | nucleus | 63.64 | 58.33 |
| PGSC0003DMT400047010 | Potato | cytosol | 62.12 | 57.75 |
| Solyc01g102830.2.1 | Tomato | cytosol | 62.12 | 57.75 |
| AT2G02510.1 | Thale cress | cytosol, golgi, nucleus | 62.12 | 56.94 |
| CDY45258 | Canola | cytosol, mitochondrion, nucleus | 63.64 | 56.76 |
| CDY39310 | Canola | cytosol, mitochondrion, nucleus | 63.64 | 56.76 |
| CDX84028 | Canola | cytosol | 63.64 | 56.76 |
| Bra026218.1-P | Field mustard | cytosol, mitochondrion, nucleus | 63.64 | 56.76 |
| Os07t0175750-00 | Rice | mitochondrion | 37.88 | 53.19 |
| KRH01881 | Soybean | cytosol | 66.67 | 52.38 |
| HORVU6Hr1G015900.1 | Barley | extracellular | 69.7 | 50.0 |
| AT1G14450.2 | Thale cress | mitochondrion | 66.67 | 45.36 |
| Bra026829.1-P | Field mustard | nucleus | 40.91 | 40.3 |
| Zm00001d053339_P001 | Maize | mitochondrion | 48.48 | 38.55 |
| Zm00001d053278_P001 | Maize | mitochondrion | 46.97 | 23.85 |
| Zm00001d035942_P001 | Maize | mitochondrion | 48.48 | 20.91 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P28850_001 | EnsemblPlants:GSMUA_Achr6T28850_001 | EnsemblPlantsGene:GSMUA_Achr6G28850_001 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005747 | GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022900 | InterPro:NDUFB3 | PANTHER:PTHR15082 |
| PFAM:PF08122 | TMHMM:TMhelix | UniParc:UPI000295BCDB | UniProt:M0TB30 | MapMan:2.4.1.4.2.2 | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G28850_001]
Coordinates
chr6:+:29150370..29150633
Molecular Weight (calculated)
7520.0 Da
IEP (calculated)
10.550
GRAVY (calculated)
-0.571
Length
66 amino acids
Sequence
(BLAST)
(BLAST)
1: MAKPLGPTGE FFRRRDEWRK HPMLTNNLRR ATPGLGIALV AFGVYLAGEA AYNYFHRPDA HSTTHH
1: MICHLRRKLR GIVRSQEINR IPEKMAKPLG TTGEFFRRRD EWRKHPMLSN QMRHALPGLG IGVAAFCVYL VGEQIYNKAL APSKSSHHHQ EQTAPSH
Arabidopsis Description
NADH dehydrogenase (ubiquinone)s [Source:TAIR;Acc:AT1G14450]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.