Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
23198870
mitochondrion: 27297264 mitochondrion: 29575040 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
23198870
doi
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID:
29575040
doi
Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G180900.1 | Wheat | cytosol | 95.52 | 95.52 |
| TraesCS6A01G198900.1 | Wheat | cytosol | 95.52 | 95.52 |
| TraesCS6B01G221500.1 | Wheat | cytosol | 94.03 | 94.03 |
| EES05275 | Sorghum | cytosol | 92.54 | 93.94 |
| TraesCS6B01G115500.1 | Wheat | cytosol | 89.55 | 86.96 |
| GSMUA_Achr8P29080_001 | Banana | cytosol, mitochondrion | 68.66 | 69.7 |
| VIT_12s0035g01940.t01 | Wine grape | cytosol | 71.64 | 68.57 |
| GSMUA_Achr3P16720_001 | Banana | cytosol | 67.16 | 68.18 |
| GSMUA_Achr6P28850_001 | Banana | cytosol | 65.67 | 66.67 |
| HORVU6Hr1G015900.1 | Barley | extracellular | 91.04 | 66.3 |
| Solyc01g102830.2.1 | Tomato | cytosol | 62.69 | 59.15 |
| PGSC0003DMT400047010 | Potato | cytosol | 62.69 | 59.15 |
| CDY09364 | Canola | cytosol | 58.21 | 54.93 |
| CDY15839 | Canola | nucleus | 58.21 | 54.17 |
| Bra026590.1-P | Field mustard | nucleus | 58.21 | 54.17 |
| KRH01881 | Soybean | cytosol | 67.16 | 53.57 |
| AT2G02510.1 | Thale cress | cytosol, golgi, nucleus | 56.72 | 52.78 |
| CDY45258 | Canola | cytosol, mitochondrion, nucleus | 56.72 | 51.35 |
| CDY39310 | Canola | cytosol, mitochondrion, nucleus | 56.72 | 51.35 |
| CDX84028 | Canola | cytosol | 56.72 | 51.35 |
| Bra026218.1-P | Field mustard | cytosol, mitochondrion, nucleus | 56.72 | 51.35 |
| Zm00001d053339_P001 | Maize | mitochondrion | 59.7 | 48.19 |
| AT1G14450.2 | Thale cress | mitochondrion | 59.7 | 41.24 |
| Bra026829.1-P | Field mustard | nucleus | 35.82 | 35.82 |
| Zm00001d053278_P001 | Maize | mitochondrion | 58.21 | 30.0 |
| Zm00001d035942_P001 | Maize | mitochondrion | 62.69 | 27.45 |
Protein Annotations
| EntrezGene:100381333 | MapMan:2.4.1.4.2.2 | ProteinID:AQK71859.1 | UniProt:B4FFU4 | EMBL:BT035982 | EMBL:BT041254 |
| EMBL:EU951893 | EMBL:EU954413 | EMBL:EU958828 | EMBL:EU967629 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005747 | GO:GO:0006091 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022900 | InterPro:NDUFB3 |
| PANTHER:PTHR15082 | TMHMM:TMhelix | UniParc:UPI0000E646B5 | EnsemblPlantsGene:Zm00001d016864 | EnsemblPlants:Zm00001d016864_P001 | EnsemblPlants:Zm00001d016864_T001 |
Description
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-A
Coordinates
chr5:+:178633252..178633455
Molecular Weight (calculated)
7436.9 Da
IEP (calculated)
10.722
GRAVY (calculated)
-0.549
Length
67 amino acids
Sequence
(BLAST)
(BLAST)
1: MASGGKGLNA TGEFFRRRDE WRRHPMAGNQ LRHATPGLGI AIVAFGIYLV GEAAYNRLYR PSGDNHH
1: MICHLRRKLR GIVRSQEINR IPEKMAKPLG TTGEFFRRRD EWRKHPMLSN QMRHALPGLG IGVAAFCVYL VGEQIYNKAL APSKSSHHHQ EQTAPSH
Arabidopsis Description
NADH dehydrogenase (ubiquinone)s [Source:TAIR;Acc:AT1G14450]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.