Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39310 | Canola | cytosol, mitochondrion, nucleus | 90.54 | 90.54 |
| CDY45258 | Canola | cytosol, mitochondrion, nucleus | 90.54 | 90.54 |
| CDY09364 | Canola | cytosol | 72.97 | 76.06 |
| CDY15839 | Canola | nucleus | 72.97 | 75.0 |
| AT1G14450.2 | Thale cress | mitochondrion | 87.84 | 67.01 |
| Solyc01g102830.2.1 | Tomato | cytosol | 63.51 | 66.2 |
| PGSC0003DMT400047010 | Potato | cytosol | 63.51 | 66.2 |
| GSMUA_Achr3P16720_001 | Banana | cytosol | 56.76 | 63.64 |
| GSMUA_Achr6P28850_001 | Banana | cytosol | 56.76 | 63.64 |
| VIT_12s0035g01940.t01 | Wine grape | cytosol | 59.46 | 62.86 |
| GSMUA_Achr8P29080_001 | Banana | cytosol, mitochondrion | 55.41 | 62.12 |
| Os02t0564200-01 | Rice | mitochondrion | 51.35 | 57.58 |
| EES05275 | Sorghum | cytosol | 51.35 | 57.58 |
| Zm00001d016864_P001 | Maize | mitochondrion | 51.35 | 56.72 |
| TraesCS6D01G180900.1 | Wheat | cytosol | 50.0 | 55.22 |
| TraesCS6A01G198900.1 | Wheat | cytosol | 50.0 | 55.22 |
| TraesCS6B01G221500.1 | Wheat | cytosol | 48.65 | 53.73 |
| TraesCS6B01G115500.1 | Wheat | cytosol | 48.65 | 52.17 |
| Bra026829.1-P | Field mustard | nucleus | 44.59 | 49.25 |
| KRH01881 | Soybean | cytosol | 55.41 | 48.81 |
| Os07t0175750-00 | Rice | mitochondrion | 28.38 | 44.68 |
| HORVU6Hr1G015900.1 | Barley | extracellular | 50.0 | 40.22 |
| Zm00001d053339_P001 | Maize | mitochondrion | 36.49 | 32.53 |
| Zm00001d053278_P001 | Maize | mitochondrion | 35.14 | 20.0 |
| Zm00001d035942_P001 | Maize | mitochondrion | 35.14 | 16.99 |
Protein Annotations
| EnsemblPlants:CDX84028 | EnsemblPlantsGene:GSBRNA2T00139844001 | GO:A0A078D9P3 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005747 | GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0022900 | InterPro:NDUFB3 | PANTHER:PTHR15082 | PFAM:PF08122 |
| ProteinID:CDX84028 | ProteinID:CDX84028.1 | UniParc:UPI0004EE4536 | MapMan:2.4.1.4.2.2 | : | : |
Description
BnaC08g16170D
Coordinates
chrLK031834:+:1802174..1802489
Molecular Weight (calculated)
8260.8 Da
IEP (calculated)
10.565
GRAVY (calculated)
-0.641
Length
74 amino acids
Sequence
(BLAST)
(BLAST)
1: MAKPLGTTGE FFRRRDEWRK HPMLSNQTRH ALPGLSIGVA AFCVYLVGEQ IYNKALAPST KSSHHNQNQP APSN
1: MICHLRRKLR GIVRSQEINR IPEKMAKPLG TTGEFFRRRD EWRKHPMLSN QMRHALPGLG IGVAAFCVYL VGEQIYNKAL APSKSSHHHQ EQTAPSH
Arabidopsis Description
NADH dehydrogenase (ubiquinone)s [Source:TAIR;Acc:AT1G14450]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.