CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026752.1-P	Field mustard	plastid	98.85	98.85
CDX88482	Canola	endoplasmic reticulum	5.17	22.5
GSMUA_Achr8P06440_001	Banana	extracellular, golgi, vacuole	11.49	15.27
CDY70253	Canola	golgi, plasma membrane	8.33	11.6
CDY70021	Canola	golgi, plasma membrane	8.05	11.48
GSMUA_Achr8P06420_001	Banana	extracellular	2.01	9.59
HORVU7Hr1G031480.1	Barley	cytosol, nucleus	1.72	7.79
Os02t0802500-01	Rice	plasma membrane	16.95	7.74
CDY39975	Canola	plasma membrane	16.95	7.67
CDX87313	Canola	endoplasmic reticulum, plasma membrane, vacuole	16.95	7.67
EES07699	Sorghum	plasma membrane	16.67	7.64
CDX96835	Canola	plasma membrane	16.67	7.54
CDX83972	Canola	plasma membrane	16.67	7.54
CDY33390	Canola	plasma membrane	16.67	7.52
CDY36581	Canola	plasma membrane	16.67	7.52
CDY53310	Canola	plasma membrane	16.95	7.36
CDY61273	Canola	plastid	10.63	6.11
CDX88491	Canola	plasma membrane	13.51	5.86
CDX87422	Canola	plasma membrane	13.51	5.86
CDX81728	Canola	plasma membrane	17.24	5.11
GSMUA_Achr8P06430_001	Banana	extracellular	0.86	2.7
CDY69601	Canola	plasma membrane	2.3	2.31
CDY69568	Canola	plasma membrane	2.3	2.31
HORVU7Hr1G031470.3	Barley	golgi, plasma membrane	0.0	0.0

Protein Annotations

KEGG:00400+1.3.1.12	KEGG:00400+1.3.1.78	KEGG:00401+1.3.1.12	Gene3D:3.40.50.720	MapMan:4.1.5.2.3	InterPro:6-PGluconate_DH-like_C_sf
GO:A0A078ITZ6	UniProt:A0A078ITZ6	InterPro:Arogenate_DH_2	EnsemblPlants:CDY53311	ProteinID:CDY53311	ProteinID:CDY53311.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004665	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006571	GO:GO:0008150	GO:GO:0008152	GO:GO:0008977
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00010425001
InterPro:IPR003099	InterPro:NAD(P)-bd_dom_sf	PFAM:PF02153	PIRSF:PIRSF036577	PFscan:PS51176	PANTHER:PTHR43207
PANTHER:PTHR43207:SF2	MetaCyc:PWY-3461	MetaCyc:PWY-7303	InterPro:Prephen_DH	SUPFAM:SSF48179	SUPFAM:SSF51735
UniPathway:UPA00122	UniParc:UPI0004EF27C9	SEG:seg	:	:	:

Description

BnaA09g56680DArogenate dehydrogenase 2, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G15710) UniProtKB/Swiss-Prot;Acc:Q9LMR3]

Coordinates

chrLK033186:+:53324..54370

Molecular Weight (calculated)

39663.4 Da

IEP (calculated)

8.157

GRAVY (calculated)

-0.411

Length

348 amino acids

Sequence
(BLAST)

001: MLLHFSPTKP LFSPPNLRRN PPVPPPRSLR IRAIDAAQIF DYETQLKSEY RKSSALKIAV LGFGNFGQFL SKTLVRHGHD LITHSRSDYS SAASSIGARF
101: FHNPHDLCEQ HPDVVLLCTS ILSTESVLRS FPFQRLRRST LFVDVLSVKE FPKTLFLKYL PKEFDILCTH PMFGPESGKH SWSGLPFVYD KVRIGDESSR
201: HERCDKFLKV FESEGCRMVE MSCEEHDKHA AGSQFVTHTM GRVLEKFGVE SSPINTKGYE TLLDLVENTS SDSFELYYGL FMYNQNALEQ LERLDMAFES
301: IKKELFGRLH QVYRKQMFGG GGEGKKTEQK LLNDGVVRVK EESSSSST

Best Arabidopsis Sequence Match ( AT1G15710.1 )
(BLAST)

001: MLLHFSPAKP LISPPNLRRN SPTFLISPPR SLRIRAIDAA QIFDYETQLK SEYRKSSALK IAVLGFGNFG QFLSKTLIRH GHDLITHSRS DYSDAANSIG
101: ARFFDNPHDL CEQHPDVVLL CTSILSTESV LRSFPFQRLR RSTLFVDVLS VKEFPKALFI KYLPKEFDIL CTHPMFGPES GKHSWSGLPF VYDKVRIGDA
201: ASRQERCEKF LRIFENEGCK MVEMSCEKHD YYAAGSQFVT HTMGRVLEKY GVESSPINTK GYETLLDLVE NTSSDSFELF YGLFMYNPNA LEQLERLDMA
301: FESVKKELFG RLHQQYRKQM FGGEVQSPKK TEQKLLNDGG VVPMNDISSS SSSSSSSS

Arabidopsis Description

TYRAAT2Arogenate dehydrogenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LMR3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.