Factsheet for GSMUA_Achr6P04910_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P04700_001
GSMUA_Achr1P14070_001
GSMUA_Achr1P27230_001
GSMUA_Achr2P01120_001
GSMUA_Achr2P12680_001
GSMUA_Achr3P09330_001
GSMUA_Achr3P25040_001
GSMUA_Achr3P25390_001
GSMUA_Achr4P22570_001
GSMUA_Achr5P07820_001
GSMUA_Achr5P09010_001
GSMUA_Achr5P27590_001
GSMUA_Achr6P15990_001
GSMUA_Achr6P23670_001
GSMUA_Achr6P24410_001
GSMUA_Achr7P01390_001
GSMUA_Achr8P05790_001
GSMUA_Achr9P17280_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56890.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT5G56890.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT5G56890.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT5G56890.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT5G56890.1	GSMUA_Achr11P...	AT2G41090.1	17360592
AT5G56890.1	GSMUA_Achr2P01120_001	AT2G41090.1	17360592
AT5G56890.1	GSMUA_Achr3P09330_001	AT2G41090.1	17360592
AT5G56890.1	GSMUA_Achr3P25040_001	AT2G41090.1	17360592
AT5G56890.1	GSMUA_Achr5P07820_001	AT2G41090.1	17360592
AT5G56890.1	GSMUA_Achr5P27590_001	AT2G41090.1	17360592
AT5G56890.1	GSMUA_Achr6P15990_001	AT2G41090.1	17360592
AT5G56890.1	GSMUA_Achr6P23670_001	AT2G41090.1	17360592
AT5G56890.1	GSMUA_Achr8P05790_001	AT2G41090.1	17360592
AT5G56890.1	GSMUA_Achr9P17280_001	AT2G41090.1	17360592
AT5G56890.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT5G56890.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT5G56890.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT5G56890.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT5G56890.1	GSMUA_Achr11P...	AT2G41100.1	17360592
AT5G56890.1	GSMUA_Achr2P01120_001	AT2G41100.1	17360592
AT5G56890.1	GSMUA_Achr3P09330_001	AT2G41100.1	17360592
AT5G56890.1	GSMUA_Achr3P25040_001	AT2G41100.1	17360592
AT5G56890.1	GSMUA_Achr5P07820_001	AT2G41100.1	17360592
AT5G56890.1	GSMUA_Achr5P27590_001	AT2G41100.1	17360592
AT5G56890.1	GSMUA_Achr6P15990_001	AT2G41100.1	17360592
AT5G56890.1	GSMUA_Achr6P23670_001	AT2G41100.1	17360592
AT5G56890.1	GSMUA_Achr8P05790_001	AT2G41100.1	17360592
AT5G56890.1	GSMUA_Achr9P17280_001	AT2G41100.1	17360592
AT5G56890.1	GSMUA_Achr1P04700_001	AT4G14640.1	17360592
AT5G56890.1	GSMUA_Achr1P14070_001	AT4G14640.1	17360592
AT5G56890.1	GSMUA_Achr1P27230_001	AT4G14640.1	17360592
AT5G56890.1	GSMUA_Achr2P12680_001	AT4G14640.1	17360592
AT5G56890.1	GSMUA_Achr3P25390_001	AT4G14640.1	17360592
AT5G56890.1	GSMUA_Achr4P22570_001	AT4G14640.1	17360592
AT5G56890.1	GSMUA_Achr5P09010_001	AT4G14640.1	17360592
AT5G56890.1	GSMUA_Achr6P24410_001	AT4G14640.1	17360592
AT5G56890.1	GSMUA_Achr7P01390_001	AT4G14640.1	17360592
AT5G56890.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT5G56890.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT5G56890.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT5G56890.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT5G56890.1	GSMUA_Achr11P...	AT5G21274.1	17360592
AT5G56890.1	GSMUA_Achr2P01120_001	AT5G21274.1	17360592
AT5G56890.1	GSMUA_Achr3P09330_001	AT5G21274.1	17360592
AT5G56890.1	GSMUA_Achr3P25040_001	AT5G21274.1	17360592
AT5G56890.1	GSMUA_Achr5P07820_001	AT5G21274.1	17360592
AT5G56890.1	GSMUA_Achr5P27590_001	AT5G21274.1	17360592
AT5G56890.1	GSMUA_Achr6P15990_001	AT5G21274.1	17360592
AT5G56890.1	GSMUA_Achr6P23670_001	AT5G21274.1	17360592
AT5G56890.1	GSMUA_Achr8P05790_001	AT5G21274.1	17360592
AT5G56890.1	GSMUA_Achr9P17280_001	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P09140_001	Banana	plasma membrane	70.85	77.64
Os01t0195200-01	Rice	mitochondrion	39.21	60.04
KRH02710	Soybean	cytosol, mitochondrion, plastid	16.04	55.0
GSMUA_Achr6P14570_001	Banana	cytosol	12.24	49.12
GSMUA_Achr5P17780_001	Banana	cytosol, plasma membrane, plastid	33.24	47.7
GSMUA_Achr6P14590_001	Banana	cytosol	14.72	47.64
CDY32893	Canola	cytosol, nucleus, plasma membrane	13.41	47.18
GSMUA_Achr6P35830_001	Banana	mitochondrion	57.29	46.51
VIT_11s0016g02150.t01	Wine grape	plastid	60.2	41.84
GSMUA_Achr3P24820_001	Banana	mitochondrion, plastid	21.28	40.67
CDY20707	Canola	plasma membrane	56.12	40.4
Bra035635.1-P	Field mustard	plasma membrane	55.69	40.34
Solyc07g039340.2.1	Tomato	plastid	60.35	40.08
GSMUA_Achr6P14550_001	Banana	plasma membrane	19.1	39.82
PGSC0003DMT400045970	Potato	plasma membrane	60.2	37.92
CDY32894	Canola	plasma membrane	58.02	37.37
Bra002786.1-P	Field mustard	plasma membrane	57.58	36.88
CDY32753	Canola	plasma membrane	57.73	36.7
GSMUA_Achr7P05190_001	Banana	plasma membrane	20.41	36.08
OQU86148	Sorghum	vacuole	58.45	36.0
AT5G56890.1	Thale cress	plasma membrane	57.43	35.4
TraesCS3D01G107000.3	Wheat	plasma membrane	57.0	33.88
TraesCS3B01G123300.2	Wheat	plasma membrane	57.0	33.68
HORVU3Hr1G019140.11	Barley	plasma membrane	57.0	33.28
GSMUA_Achr7P25210_001	Banana	peroxisome, plasma membrane, plastid	22.3	33.19
TraesCS3A01G104800.1	Wheat	plasma membrane	57.0	32.53
GSMUA_Achr2P05150_001	Banana	plasma membrane	20.99	31.58
KRH19175	Soybean	plasma membrane	58.45	31.57
KRH37393	Soybean	plasma membrane	58.89	31.54
KRH12398	Soybean	plasma membrane	58.89	31.1
GSMUA_Achr3P08310_001	Banana	plasma membrane	31.63	30.1
Zm00001d039465_P001	Maize	plasma membrane	34.55	29.62
GSMUA_Achr9P16550_001	Banana	plasma membrane	32.07	29.37
GSMUA_Achr4P20430_001	Banana	plasma membrane	21.87	28.68
GSMUA_AchrUn_...	Banana	cytosol	3.79	26.26
GSMUA_Achr7P13850_001	Banana	plasma membrane, vacuole	21.57	18.03

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.18	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr6G04910_001	EnsemblPlants:GSMUA_Achr6P04910_001	EnsemblPlants:GSMUA_Achr6T04910_001	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	UniProt:M0T489	PFAM:PF07714	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR27001	PANTHER:PTHR27001:SF283	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom
InterPro:Ser/Thr_kinase_AS	TMHMM:TMhelix	UniParc:UPI000295772F	SEG:seg	:	:

Description

retrotransposon protein, putative, unclassified, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G04910_001]

Coordinates

chr6:+:3337058..3342857

Molecular Weight (calculated)

75287.4 Da

IEP (calculated)

6.984

GRAVY (calculated)

-0.077

Length

686 amino acids

Sequence
(BLAST)

001: MKHAGSVAPP TSISSPISSR QRHGVPVASP PAEGYRHLTP ANGSPSEDCM SLVCVEPLTI PPPGSPCVCV LPIRVGLRLS TTLYTFFPLV PEFAQEIAFG
101: IYMKQSQVRI MGANVASDQP ENTIVLIDLV PVEEKFDTAT AFLSFEKFWH KDIVINTSLF GDYTVLYVLY PGLPPSPPRA PGGSNVGSFG NNSNAMAIKP
201: LGVDVRKQKV KTNRNLIAVI ILSSFSALIL CVGAAWFLWL KQRDHSHLPA TNLHKMLPLF AKSSDDFNIC EFVTNSSELP KSCISWTRHM ILGQRLSSES
301: ASFNSSIATY SGSAKTFSVS EIERATNRFD EARIIGEGGF GRVYQGTLED GTRVAVKILK RDDQQGGREF YAEVEMLSRL HHRNLVKLIG ICTEEHIRCL
401: VYELIPNGSL ESHLHGLDKE TSPLDWSARL KIALGAARAL AYLHEDSSPR VIHRDFKSSN ILLDHDYTPK VSDFGLARAA LDEQNLHIST RVMGTFGYVA
501: PEYAMTGHLL VKSDVYSYGV VLLELLTGRK PIDMLQPPVA AIASMCVQPE VSHRPFMGEV VQALKLVCNE CDENKGTGSC SHDDLSTRDT AARLSNVSGL
601: EAERVLLGSC LSSTSTRLDI DESGSFQRHS SSGPLITTSR QFWQRLRMLS TGSISEHGAA LKYETSSDCG ERCMIVLVVE LKLLEK

Best Arabidopsis Sequence Match ( AT5G56890.1 )
(BLAST)

0001: MENLTLLLRI CLVSSVLVAA SSSGSELLSP LSSPPSPLPE TSKGFGQAPS NSPESHKSDN VPPSKASSQP SLPPLADLAA PPPSDSVGGK APAGVPVVFV
0101: PNAPAPATIP VKDLPVASPP VLQPITPIAS PPRFIPGDAP KEPPFSGRVT PAPVSSPVSD IPPIPSVALP PPTPSNVPPR NASNNHKPPP IEKSIAPVAS
0201: PPTISIDIAP PVHPVIPKLT PSSSPVPTST PTKGSPRRNP PTTHPVFPIE SPAVSPDHAA NPVKHPPPSD NGDDSKSPGA APANETAKPL PVFPHKASPP
0301: SIAPSAPKFN RHSHHTSPST TPPPDSTPSN VHHHPSSPSP PPLSSHHQHH QERKKIADSP APSPLPPHLI SPKKSNRKGS MTPPPQSHHA PSPPIPDSLI
0401: SPAHAPVSFS MKRISPALAP SPTQVFPLRS SSRPSKSRKF PLGPPLQAFP PPPPNSDCSS TICLEPYTNT PPGSPCGCVW PIQVELRLSM ALYDFFPMVS
0501: EFAREISAGV FMKQSQVRIM GANAASEQPE KSIVLIDLVP LGDKFDNMTA MLTYQRFWSK KVYIDEPIFG GYDVIYVRYP GLPASPPTSG MTIIDQGPYS
0601: GNNNGRAVKP LGVDVPRKPR KKELNGGSIA VIVLSAAAFI GLCFVIVWFL VFRRQRDRRR LSKRTPLARP SLPSLSKPSG SARSLTGSRF SSTSLSFESS
0701: IAPFTLSAKT FTASEIMKAT NNFDESRVLG EGGFGRVYEG VFDDGTKVAV KVLKRDDQQG SREFLAEVEM LSRLHHRNLV NLIGICIEDR NRSLVYELIP
0801: NGSVESHLHG IDKASSPLDW DARLKIALGA ARGLAYLHED SSPRVIHRDF KSSNILLEND FTPKVSDFGL ARNALDDEDN RHISTRVMGT FGYVAPEYAM
0901: TGHLLVKSDV YSYGVVLLEL LTGRKPVDMS QPPGQENLVS WTRPFLTSAE GLAAIIDQSL GPEISFDSIA KVAAIASMCV QPEVSHRPFM GEVVQALKLV
1001: SNECDEAKEL NSLTSISKDD FRDDTQAESS CGDSSARMAR YPLLPNYDSE PDTERGLSTS EMYTGSGRFE RQSNSGPLTS GRGKSFWQKM RRLSTGSLSE
1101: HGTPTVMLRS GSR

Arabidopsis Description

Protein kinase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K946]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.