Factsheet for GSMUA_AchrUn_randomP28160_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	57.68	55.7
GSMUA_AchrUn_...	Banana	cytosol	36.3	43.35
GSMUA_Achr3P22320_001	Banana	cytosol	80.18	40.27
GSMUA_Achr3P22250_001	Banana	cytosol	83.52	38.94
GSMUA_Achr3P22260_001	Banana	cytosol	81.29	38.75
GSMUA_Achr3P22280_001	Banana	cytosol	81.74	38.47
GSMUA_AchrUn_...	Banana	plastid	34.97	36.77
GSMUA_Achr3P22290_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	85.3	33.22
GSMUA_Achr3P22310_001	Banana	cytosol	70.38	28.34
GSMUA_Achr6P21800_001	Banana	cytosol, extracellular, nucleus	54.57	20.03
TraesCS2A01G362300.1	Wheat	cytosol, mitochondrion, nucleus, plasma membrane, plastid	39.2	19.23
GSMUA_Achr6P34690_001	Banana	extracellular	59.02	19.06
GSMUA_Achr10P...	Banana	extracellular	41.2	18.35
GSMUA_Achr6P08580_001	Banana	cytosol	35.63	17.64
GSMUA_Achr7P21400_001	Banana	extracellular	42.32	17.51
GSMUA_Achr4P31030_001	Banana	cytosol	41.65	17.14
TraesCS2D01G359800.1	Wheat	cytosol, extracellular, nucleus, plastid	40.09	16.45
GSMUA_Achr10P...	Banana	cytosol, golgi	26.73	16.09
TraesCS2B01G380100.1	Wheat	cytosol, extracellular, nucleus, plastid	38.75	15.98
HORVU2Hr1G087730.13	Barley	cytosol	39.87	15.7
GSMUA_Achr8P21580_001	Banana	cytosol, plastid	33.85	15.59
GSMUA_Achr10P...	Banana	cytosol, golgi, mitochondrion	26.73	15.35
GSMUA_Achr6P32070_001	Banana	cytosol	36.97	15.12
GSMUA_Achr9P11390_001	Banana	extracellular	32.29	15.01
VIT_15s0024g00440.t01	Wine grape	cytosol	29.84	14.39
GSMUA_Achr9P17060_001	Banana	endoplasmic reticulum, vacuole	34.3	14.17
VIT_15s0024g00400.t01	Wine grape	cytosol, plasma membrane	35.41	13.78
GSMUA_Achr10P...	Banana	nucleus	34.52	13.66
GSMUA_Achr3P09290_001	Banana	plastid	36.97	13.47
GSMUA_Achr6P32040_001	Banana	cytosol, extracellular, nucleus, plastid	34.52	12.6
VIT_15s0024g00450.t01	Wine grape	cytosol	15.81	9.29

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP28160_001	EnsemblPlants:GSMUA_AchrUn_randomT28160_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG28160_001	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0043531	InterPro:NB-ARC	InterPro:P-loop_NTPase	PANTHER:PTHR23155	PFAM:PF00931
PRINTS:PR00364	SEG:seg	SUPFAM:SSF52058	SUPFAM:SSF52540	UniParc:UPI00029607E7	UniProt:M0UD24
MapMan:35.1	:	:	:	:	:

Description

Putative disease resistance protein RGA1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG28160_001]

Coordinates

chrchrUn_random:+:137044245..137046341

Molecular Weight (calculated)

50822.4 Da

IEP (calculated)

7.198

GRAVY (calculated)

-0.219

Length

449 amino acids

Sequence
(BLAST)

001: LAIVGIGGVG KTTLAQQAYN HERVKDYFQH EVWVCVSDNF NKNLTSKRFL LVLDDVWNED SLKWERFCAP LRYGEPGSKI LITTRSKMIA EMVGNPIPLG
101: GLDETSYWKL FKKCAFGSED EGEFPQLEAI AKKIAGRLKG LPLAAKTVGG LLKAQMTEKH WRNIAGSEIW QLLQDEEGVL PVLQLSYRYL IRLWMAEGYV
201: AQDNMTPEAV GSGYFRELFC RIDDDESKEI PNTIRHLSAT ITDKTKLIEF SLLILQRCGL RELPETIGGS IHLRYLDISH NFYFRRLPES LCGLYNLRVL
301: DLKQEANKAN LNNKQYLGAL ALEWTSDDGS SLNGNELVVS EEVLEGLQPH QALKRLAIRG YNGVRSPSWL QAQLLANLIT LEIKNCKAWE DLSYIGQLPN
401: LKKLYVKGMP AVKQISHELS HGFFGCRGQG KCFPCLEVLN FSYMPAWAE

Best Arabidopsis Sequence Match ( AT3G14470.1 )
(BLAST)

0001: MTGIGEMFLA AFLQALFQTL VSEPFRSFFK RRELNENLLE RLSTALLTIT AVLIDAEEKQ ITNPVVEKWV NELRDVVYHA EDALDDIATE ALRLNIGAES
0101: SSSNRLRQLR GRMSLGDFLD GNSEHLETRL EKVTIRLERL ASQRNILGLK ELTAMIPKQR LPTTSLVDES EVFGRDDDKD EIMRFLIPEN GKDNGITVVA
0201: IVGIGGVGKT TLSQLLYNDQ HVRSYFGTKV WAHVSEEFDV FKITKKVYES VTSRPCEFTD LDVLQVKLKE RLTGTGLPFL LVLDDLWNEN FADWDLLRQP
0301: FIHAAQGSQI LVTTRSQRVA SIMCAVHVHN LQPLSDGDCW SLFMKTVFGN QEPCLNREIG DLAERIVHKC RGLPLAVKTL GGVLRFEGKV IEWERVLSSR
0401: IWDLPADKSN LLPVLRVSYY YLPAHLKRCF AYCSIFPKGH AFEKDKVVLL WMAEGFLQQT RSSKNLEELG NEYFSELESR SLLQKTKTRY IMHDFINELA
0501: QFASGEFSSK FEDGCKLQVS ERTRYLSYLR DNYAEPMEFE ALREVKFLRT FLPLSLTNSS RSCCLDQMVS EKLLPTLTRL RVLSLSHYKI ARLPPDFFKN
0601: ISHARFLDLS RTELEKLPKS LCYMYNLQTL LLSYCSSLKE LPTDISNLIN LRYLDLIGTK LRQMPRRFGR LKSLQTLTTF FVSASDGSRI SELGGLHDLH
0701: GKLKIVELQR VVDVADAAEA NLNSKKHLRE IDFVWRTGSS SSENNTNPHR TQNEAEVFEK LRPHRHIEKL AIERYKGRRF PDWLSDPSFS RIVCIRLREC
0801: QYCTSLPSLG QLPCLKELHI SGMVGLQSIG RKFYFSDQQL RDQDQQPFRS LETLRFDNLP DWQEWLDVRV TRGDLFPSLK KLFILRCPEL TGTLPTFLPS
0901: LISLHIYKCG LLDFQPDHHE YSYRNLQTLS IKSSCDTLVK FPLNHFANLD KLEVDQCTSL YSLELSNEHL RGPNALRNLR INDCQNLQLL PKLNALPQNL
1001: QVTITNCRYL RQPMEQQPQY HHPQFHLPRS NVSGSPKSHG SHRSYDSRSS SRYD

Arabidopsis Description

RPPL1Putative disease resistance RPP13-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR4]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.