CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
peroxisome 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	plastid
MultiLoc:	peroxisome
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68486	Soybean	cytosol	79.18	85.44
KRG96773	Soybean	nucleus	73.31	79.11
KRG96774	Soybean	nucleus	71.55	76.73
KRG92916	Soybean	nucleus	71.55	75.78
KRG96772	Soybean	nucleus	74.78	75.67
KRH68487	Soybean	cytosol	68.92	73.9
Solyc01g099910.2.1	Tomato	cytosol	63.64	69.11
PGSC0003DMT400063718	Potato	cytosol	62.46	67.83
GSMUA_Achr8P10290_001	Banana	cytosol	61.88	66.14
VIT_14s0060g01940.t01	Wine grape	cytosol	61.0	65.62
Bra039422.1-P	Field mustard	cytosol	61.58	63.44
HORVU3Hr1G070810.3	Barley	cytosol, peroxisome	19.06	63.11
GSMUA_Achr3P08130_001	Banana	cytosol	58.65	63.09
KRG96457	Soybean	nucleus	58.65	63.09
CDY05187	Canola	cytosol	62.76	62.94
CDY27752	Canola	cytosol	61.88	62.06
GSMUA_AchrUn_...	Banana	peroxisome	57.48	61.83
AT3G05600.1	Thale cress	cytosol	59.24	61.03
TraesCS7A01G222400.1	Wheat	cytosol	52.79	59.41
TraesCS7D01G228900.1	Wheat	cytosol	52.49	58.12
TraesCS7A01G225600.1	Wheat	cytosol	54.84	58.07
TraesCS7B01G128800.1	Wheat	cytosol	54.55	57.76
TraesCS7D01G224000.1	Wheat	unclear	54.25	57.45
KRH68206	Soybean	peroxisome	50.73	57.28
TraesCS3D01G180600.1	Wheat	peroxisome	53.96	57.14
TraesCS3B01G204900.1	Wheat	peroxisome	53.96	57.14
TraesCS3A01G175200.2	Wheat	peroxisome	53.67	56.83
TraesCS7B01G129100.1	Wheat	cytosol	53.37	56.52
TraesCS7B01G128900.1	Wheat	unclear	53.37	56.52
TraesCS7B01G194000.1	Wheat	cytosol	53.08	56.04
KRH50813	Soybean	cytosol	35.48	56.02
EES00506	Sorghum	cytosol	53.37	56.0
Os01t0255000-01	Rice	cytosol	52.79	55.9
Os01t0255100-01	Rice	cytosol	52.79	55.56
KRH02278	Soybean	cytosol	56.89	54.8
GSMUA_Achr8P22510_001	Banana	peroxisome	43.7	54.58
Os05t0273800-01	Rice	cytosol, peroxisome, plastid	52.79	54.38
HORVU7Hr1G045640.2	Barley	plastid	55.13	53.41
KRG92918	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	17.01	52.73
TraesCS7D01G224200.1	Wheat	golgi, unclear	54.25	52.71
TraesCS7A01G222600.1	Wheat	golgi, unclear	54.25	52.56
EES17023	Sorghum	extracellular, plastid, vacuole	53.96	49.2
HORVU3Hr1G070830.1	Barley	cytosol, peroxisome	24.34	47.7
KRH69845	Soybean	cytosol	45.16	47.09
HORVU3Hr1G035400.1	Barley	plastid	54.84	46.17
HORVU7Hr1G045620.2	Barley	cytosol, mitochondrion, peroxisome	20.53	45.45
KRH08141	Soybean	cytosol	43.4	45.26
KRH25591	Soybean	cytosol	35.19	38.22
KRH55994	Soybean	cytosol	34.9	37.9
KRH55995	Soybean	nucleus	34.6	37.46
KRH22405	Soybean	cytoskeleton, cytosol, peroxisome	34.02	37.3
KRH26931	Soybean	cytoskeleton, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	29.33	35.84
KRH25546	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	34.6	34.81
KRH20490	Soybean	cytosol	31.67	34.73
KRH20488	Soybean	peroxisome	33.14	33.83
GSMUA_Achr3P24120_001	Banana	cytosol	58.36	31.39
KRG94755	Soybean	cytosol, peroxisome, plastid	24.93	29.21
KRH37569	Soybean	cytosol	15.25	28.73
KRH25547	Soybean	cytosol	12.32	28.0
KRH25548	Soybean	cytosol	13.78	26.7

Protein Annotations

EntrezGene:100811640	Gene3D:3.40.50.1820	MapMan:35.2	UniProt:A0A0R0F394	InterPro:AB_hydrolase	InterPro:AB_hydrolase_1
EMBL:ACUP02012162	InterPro:Epox_hydrolase-like	EnsemblPlantsGene:GLYMA_19G231700	GO:GO:0003674	GO:GO:0003824	InterPro:IPR029058
EnsemblPlants:KRG96771	ProteinID:KRG96771	ProteinID:KRG96771.1	PFAM:PF00561	PRINTS:PR00412	PANTHER:PTHR43329
PANTHER:PTHR43329:SF20	SUPFAM:SSF53474	UniParc:UPI000233E77B	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:48218808..48221453

Molecular Weight (calculated)

38823.6 Da

IEP (calculated)

6.242

GRAVY (calculated)

-0.165

Length

341 amino acids

Sequence
(BLAST)

001: MCEHLLVSLS CYIWVRTQRI VEFNEMEQIK HRIVEVNGIK MHVAEKGEGP VVLFLHGFPE LWYSWRHQIL SLSSLGYRAV APDLRGYGDT EAPPSISSYN
101: CFHIVGDLVA LIDSLGVQQV FLVAHDWGAI IGWYLCMFRP DKVKAYVCLS VPFWPRNPKV KPVDAMRAIY GDDYYICRFQ EPGKAEGELA KNSTEQVIKN
201: VFISRKPGPP ILEKEGMGFN PNTSMPLPTW LSQEDLTYYA SKFEKTGFTG GLNYYRNFNL NWELTAPWTG AQVKVPVKFI TGDLDLVYTS LGTKNYIESG
301: AFKKDVPNLE EVVVQEGVAH FNNQEAAEDV SNHIYDFIKK F

Best Arabidopsis Sequence Match ( AT3G05600.1 )
(BLAST)

001: MEGIDHRMVS VNGITMHIAE KGPKEGPVVL LLHGFPDLWY TWRHQISGLS SLGYRAVAPD LRGYGDSDSP ESFSEYTCLN VVGDLVALLD SVAGNQEKVF
101: LVGHDWGAII GWFLCLFRPE KINGFVCLSV PYRSRNPKVK PVQGFKAVFG DDYYICRFQE PGKIEGEIAS ADPRIFLRNL FTGRTLGPPI LPKDNPFGEK
201: PNPNSENIEL PEWFSKKDLD FYVSKFEKAG FTGGLNYYRA MDLNWELTAP WTGAKIQVPV KFMTGDFDMV YTTPGMKEYI HGGGFAADVP TLQEIVVIED
301: AGHFVNQEKP QEVTAHINDF FTKLRDNNKS F

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9M9W5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.