CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 2
peroxisome 1
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68206	Soybean	peroxisome	81.07	85.1
PGSC0003DMT400046206	Potato	peroxisome	76.66	76.42
Solyc06g009170.2.1	Tomato	extracellular	76.34	76.1
VIT_07s0005g00700.t01	Wine grape	cytosol	74.13	74.13
Bra036276.1-P	Field mustard	cytosol	70.35	70.57
CDY65636	Canola	peroxisome	70.35	70.57
CDY50394	Canola	peroxisome	70.03	70.25
AT4G02340.1	Thale cress	peroxisome	71.29	69.75
Bra036275.1-P	Field mustard	cytosol	68.45	68.89
CDY65635	Canola	cytosol	68.45	68.89
GSMUA_Achr3P08130_001	Banana	cytosol	67.19	67.19
GSMUA_Achr8P10290_001	Banana	cytosol	67.19	66.77
CDY50393	Canola	cytosol	51.73	65.86
KRH68486	Soybean	cytosol	61.51	61.71
GSMUA_AchrUn_...	Banana	peroxisome	61.51	61.51
KRG96773	Soybean	nucleus	60.88	61.08
KRG96774	Soybean	nucleus	59.94	59.75
GSMUA_Achr8P22510_001	Banana	peroxisome	51.42	59.71
TraesCS7A01G225600.1	Wheat	cytosol	60.57	59.63
KRH68487	Soybean	cytosol	59.31	59.12
KRG96772	Soybean	nucleus	62.78	59.05
TraesCS7D01G228900.1	Wheat	cytosol	57.1	58.77
KRG96771	Soybean	nucleus	63.09	58.65
TraesCS7A01G222400.1	Wheat	cytosol	55.84	58.42
TraesCS7D01G224000.1	Wheat	unclear	59.31	58.39
KRH02278	Soybean	cytosol	64.98	58.19
KRG92916	Soybean	nucleus	58.99	58.07
Zm00001d012908_P001	Maize	peroxisome	18.61	57.84
TraesCS7B01G128800.1	Wheat	cytosol	58.68	57.76
EES00506	Sorghum	cytosol	58.99	57.54
Os01t0255000-01	Rice	cytosol	58.36	57.45
Os05t0273800-01	Rice	cytosol, peroxisome, plastid	59.94	57.4
TraesCS7B01G194000.1	Wheat	cytosol	58.36	57.28
TraesCS3B01G204900.1	Wheat	peroxisome	58.04	57.14
TraesCS7B01G129100.1	Wheat	cytosol	58.04	57.14
KRH50813	Soybean	cytosol	38.8	56.94
TraesCS7B01G128900.1	Wheat	unclear	57.73	56.83
TraesCS3D01G180600.1	Wheat	peroxisome	57.73	56.83
HORVU3Hr1G070810.3	Barley	cytosol, peroxisome	18.3	56.31
TraesCS3A01G175200.2	Wheat	peroxisome	57.1	56.21
Os01t0255100-01	Rice	cytosol	56.15	54.94
HORVU3Hr1G070830.1	Barley	cytosol, peroxisome	29.65	54.02
HORVU7Hr1G045640.2	Barley	plastid	59.31	53.41
TraesCS7D01G224200.1	Wheat	golgi, unclear	58.68	52.99
TraesCS7A01G222600.1	Wheat	golgi, unclear	58.68	52.84
HORVU7Hr1G045620.2	Barley	cytosol, mitochondrion, peroxisome	25.55	52.6
EES17023	Sorghum	extracellular, plastid, vacuole	58.04	49.2
KRG92918	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	16.4	47.27
Zm00001d012907_P001	Maize	peroxisome	23.97	46.63
KRH69845	Soybean	cytosol	47.63	46.18
HORVU3Hr1G035400.1	Barley	plastid	57.73	45.19
KRH08141	Soybean	cytosol	45.43	44.04
KRH25591	Soybean	cytosol	36.59	36.94
KRH55994	Soybean	cytosol	35.96	36.31
KRH55995	Soybean	nucleus	35.65	35.87
KRH22405	Soybean	cytoskeleton, cytosol, peroxisome	34.7	35.37
KRH20490	Soybean	cytosol	34.07	34.73
KRH25546	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	35.65	33.33
KRH20488	Soybean	peroxisome	35.02	33.23
KRH26931	Soybean	cytoskeleton, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	28.08	31.9
GSMUA_Achr3P24120_001	Banana	cytosol	63.41	31.7
KRG94755	Soybean	cytosol, peroxisome, plastid	26.81	29.21
KRH25547	Soybean	cytosol	12.93	27.33
KRH25548	Soybean	cytosol	14.51	26.14
KRH37569	Soybean	cytosol	14.51	25.41

Protein Annotations

EMBL:ACUP02012155	EnsemblPlants:KRG96457	EnsemblPlantsGene:GLYMA_19G211900	EntrezGene:100799903	Gene3D:3.40.50.1820	GO:GO:0003674
GO:GO:0003824	InterPro:AB_hydrolase	InterPro:AB_hydrolase_1	InterPro:Epox_hydrolase-like	InterPro:IPR029058	PANTHER:PTHR43329
PANTHER:PTHR43329:SF13	PFAM:PF00561	PRINTS:PR00111	PRINTS:PR00412	ProteinID:KRG96457	ProteinID:KRG96457.1
SUPFAM:SSF53474	UniParc:UPI000233E1A9	UniProt:I1NB78	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr19:-:46566661..46569138

Molecular Weight (calculated)

35812.1 Da

IEP (calculated)

7.070

GRAVY (calculated)

-0.132

Length

317 amino acids

Sequence
(BLAST)

001: MEKIEHKTVR TNGINMHVAS IGSGPVVLFL HGFPELWYTW RHQLLSLSAV GYRAIAPDLR GYGDTDAPPD ASSYSALHIV ADLVGLLDAL GIERVFLVGH
101: DWGASIAWHF CLLRPDRVKA LVNMSVVFRP RNPNRKPIQS LRAIMGDDYY ICRFQKPGEV EEEFARAGAA RIIKTFIASR DPRPPCVPKE IGFGGSPDLR
201: IDLPSWLTEE DVNYYASKFE QKGFTGGLNY YRAMDLTWEL TAAWTGVQIK VPVKFIVGDL DITYNTPGVK EYIHNGGFKR DVPFLQELVV MEGVAHFINQ
301: ERPQEISAHI YDFIKKF

Best Arabidopsis Sequence Match ( AT4G02340.1 )
(BLAST)

001: MEKIEHTTIS TNGINMHVAS IGSGPVILFV HGFPDLWYSW RHQLVSFAAL GYRAIAPDLR GYGDSDAPPS RESYTILHIV GDLVGLLDSL GVDRVFLVGH
101: DWGAIVAWWL CMIRPDRVNA LVNTSVVFNP RNPSVKPVDA FRALFGDDYY ICRFQEPGEI EEDFAQVDTK KLITRFFTSR NPRPPCIPKS VGFRGLPDPP
201: SLPAWLTEQD VRFYGDKFSQ KGFTGGLNYY RALNLSWELT APWTGLQIKV PVKFIVGDLD ITYNIPGTKE YIHEGGLKKH VPFLQEVVVM EGVGHFLHQE
301: KPDEVTDHIY GFFKKFRTRE TASL

Arabidopsis Description

AT4g02340 protein [Source:UniProtKB/TrEMBL;Acc:O81299]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.