CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
peroxisome 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96773	Soybean	nucleus	84.59	85.13
KRH68487	Soybean	cytosol	83.33	83.33
KRG96772	Soybean	nucleus	86.16	81.31
KRG92916	Soybean	nucleus	76.1	75.16
KRH68486	Soybean	cytosol	71.7	72.15
KRG96771	Soybean	nucleus	76.73	71.55
Solyc01g099910.2.1	Tomato	cytosol	64.15	64.97
PGSC0003DMT400063718	Potato	cytosol	63.52	64.33
VIT_14s0060g01940.t01	Wine grape	cytosol	62.89	63.09
GSMUA_Achr8P10290_001	Banana	cytosol	61.64	61.44
HORVU3Hr1G070810.3	Barley	cytosol, peroxisome	19.81	61.16
GSMUA_Achr3P08130_001	Banana	cytosol	60.69	60.88
KRG96457	Soybean	nucleus	59.75	59.94
GSMUA_AchrUn_...	Banana	peroxisome	59.43	59.62
Bra039422.1-P	Field mustard	cytosol	61.64	59.21
CDY05187	Canola	cytosol	62.89	58.82
CDY27752	Canola	cytosol	61.64	57.65
AT3G05600.1	Thale cress	cytosol	59.75	57.4
TraesCS7D01G228900.1	Wheat	cytosol	55.35	57.14
KRH50813	Soybean	cytosol	38.36	56.48
TraesCS7A01G222400.1	Wheat	cytosol	53.77	56.44
TraesCS7A01G225600.1	Wheat	cytosol	56.6	55.9
TraesCS7B01G128900.1	Wheat	unclear	56.29	55.59
TraesCS7B01G128800.1	Wheat	cytosol	56.29	55.59
TraesCS7D01G224000.1	Wheat	unclear	55.97	55.28
TraesCS7B01G129100.1	Wheat	cytosol	55.66	54.97
Os01t0255000-01	Rice	cytosol	55.66	54.97
TraesCS7B01G194000.1	Wheat	cytosol	55.66	54.8
KRH68206	Soybean	peroxisome	51.57	54.3
Os05t0273800-01	Rice	cytosol, peroxisome, plastid	56.29	54.08
KRH02278	Soybean	cytosol	60.06	53.95
TraesCS3D01G180600.1	Wheat	peroxisome	54.4	53.73
TraesCS3B01G204900.1	Wheat	peroxisome	54.4	53.73
TraesCS3A01G175200.2	Wheat	peroxisome	54.09	53.42
GSMUA_Achr8P22510_001	Banana	peroxisome	45.6	53.11
EES00506	Sorghum	cytosol	54.09	52.92
KRG92918	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	18.24	52.73
HORVU7Hr1G045640.2	Barley	plastid	57.23	51.7
Os01t0255100-01	Rice	cytosol	52.52	51.54
TraesCS7D01G224200.1	Wheat	golgi, unclear	56.29	51.0
TraesCS7A01G222600.1	Wheat	golgi, unclear	56.29	50.85
EES17023	Sorghum	extracellular, plastid, vacuole	56.6	48.13
HORVU3Hr1G070830.1	Barley	cytosol, peroxisome	26.1	47.7
HORVU7Hr1G045620.2	Barley	cytosol, mitochondrion, peroxisome	21.7	44.81
KRH69845	Soybean	cytosol	45.28	44.04
KRH08141	Soybean	cytosol	43.71	42.51
HORVU3Hr1G035400.1	Barley	plastid	54.09	42.47
KRH25591	Soybean	cytosol	36.48	36.94
KRH55994	Soybean	cytosol	35.53	35.99
KRH55995	Soybean	nucleus	35.22	35.56
KRH22405	Soybean	cytoskeleton, cytosol, peroxisome	34.59	35.37
KRH26931	Soybean	cytoskeleton, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	30.19	34.41
KRH20488	Soybean	peroxisome	35.85	34.13
KRH20490	Soybean	cytosol	33.33	34.08
KRH25546	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	35.53	33.33
GSMUA_Achr3P24120_001	Banana	cytosol	61.01	30.6
KRG94755	Soybean	cytosol, peroxisome, plastid	25.47	27.84
KRH37569	Soybean	cytosol	14.15	24.86
KRH25547	Soybean	cytosol	11.01	23.33
KRH25548	Soybean	cytosol	12.58	22.73

Protein Annotations

EMBL:ACUP02012162	EnsemblPlants:KRG96774	EnsemblPlantsGene:GLYMA_19G232000	EntrezGene:100812717	Gene3D:3.40.50.1820	GO:GO:0003674
GO:GO:0003824	InterPro:AB_hydrolase	InterPro:AB_hydrolase_1	InterPro:Epox_hydrolase-like	InterPro:IPR029058	PANTHER:PTHR43329
PANTHER:PTHR43329:SF20	PFAM:PF00561	PRINTS:PR00412	ProteinID:KRG96774	ProteinID:KRG96774.1	SUPFAM:SSF53474
UniParc:UPI000233E77D	UniProt:I1NBV8	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:48237268..48238827

Molecular Weight (calculated)

36058.2 Da

IEP (calculated)

5.595

GRAVY (calculated)

-0.178

Length

318 amino acids

Sequence
(BLAST)

001: MEGVIHRTVE VNGIKMHIAE KGEGPVVLFL HGFPELWYSW RHQILSLSSL GYRAVAPDLR GYGDTEAPPS IDSYTCFHIV GDLVALIDSL GVQQVFLVAH
101: DWGALMGWYL CMFRPEKVKA YVCLSVPFIP RNPNVRTVDG LRAMYGEDYY ISRFQKPGEM EAQMAEVGTE YVLKNLLTTR KTGPPTFPKG EYGTGFNPNM
201: TDILPSWLTE EDLAYYVSKF EKTGFTGGLN YYRNINSNWE LTTPWTRVQI KVPVKFIAGE LDMVYTSLGI KEYIHGGGFK EDVPNLEQVI VQKGVAHFNN
301: QEAAEDISNY IHDFINKF

Best Arabidopsis Sequence Match ( AT3G05600.1 )
(BLAST)

001: MEGIDHRMVS VNGITMHIAE KGPKEGPVVL LLHGFPDLWY TWRHQISGLS SLGYRAVAPD LRGYGDSDSP ESFSEYTCLN VVGDLVALLD SVAGNQEKVF
101: LVGHDWGAII GWFLCLFRPE KINGFVCLSV PYRSRNPKVK PVQGFKAVFG DDYYICRFQE PGKIEGEIAS ADPRIFLRNL FTGRTLGPPI LPKDNPFGEK
201: PNPNSENIEL PEWFSKKDLD FYVSKFEKAG FTGGLNYYRA MDLNWELTAP WTGAKIQVPV KFMTGDFDMV YTTPGMKEYI HGGGFAADVP TLQEIVVIED
301: AGHFVNQEKP QEVTAHINDF FTKLRDNNKS F

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9M9W5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.