CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
peroxisome 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96773	Soybean	nucleus	85.76	91.46
KRG96774	Soybean	nucleus	81.31	86.16
KRH68487	Soybean	cytosol	79.53	84.28
KRG92916	Soybean	nucleus	73.0	76.4
KRG96771	Soybean	nucleus	75.67	74.78
KRH68486	Soybean	cytosol	69.73	74.37
PGSC0003DMT400063718	Potato	cytosol	63.5	68.15
Solyc01g099910.2.1	Tomato	cytosol	63.2	67.83
VIT_14s0060g01940.t01	Wine grape	cytosol	61.13	64.98
KRG96457	Soybean	nucleus	59.05	62.78
GSMUA_Achr8P10290_001	Banana	cytosol	58.75	62.07
GSMUA_Achr3P08130_001	Banana	cytosol	58.16	61.83
HORVU3Hr1G070810.3	Barley	cytosol, peroxisome	18.69	61.16
Bra039422.1-P	Field mustard	cytosol	58.46	59.52
CDY05187	Canola	cytosol	59.94	59.41
GSMUA_AchrUn_...	Banana	peroxisome	55.79	59.31
CDY27752	Canola	cytosol	58.75	58.24
AT3G05600.1	Thale cress	cytosol	56.68	57.7
TraesCS7D01G228900.1	Wheat	cytosol	52.52	57.47
TraesCS7A01G222400.1	Wheat	cytosol	51.63	57.43
TraesCS7B01G128900.1	Wheat	unclear	54.3	56.83
KRH68206	Soybean	peroxisome	50.74	56.62
TraesCS7A01G225600.1	Wheat	cytosol	54.01	56.52
TraesCS7B01G128800.1	Wheat	cytosol	53.71	56.21
TraesCS7D01G224000.1	Wheat	unclear	53.41	55.9
TraesCS7B01G129100.1	Wheat	cytosol	53.41	55.9
TraesCS7B01G194000.1	Wheat	cytosol	52.52	54.8
KRH50813	Soybean	cytosol	35.01	54.63
Os01t0255000-01	Rice	cytosol	51.93	54.35
GSMUA_Achr8P22510_001	Banana	peroxisome	43.92	54.21
Os05t0273800-01	Rice	cytosol, peroxisome, plastid	53.12	54.08
EES00506	Sorghum	cytosol	51.93	53.85
TraesCS3D01G180600.1	Wheat	peroxisome	51.34	53.73
TraesCS3B01G204900.1	Wheat	peroxisome	51.34	53.73
KRH02278	Soybean	cytosol	56.38	53.67
TraesCS3A01G175200.2	Wheat	peroxisome	51.04	53.42
Os01t0255100-01	Rice	cytosol	51.34	53.4
HORVU7Hr1G045640.2	Barley	plastid	55.19	52.84
KRG92918	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	17.21	52.73
TraesCS7D01G224200.1	Wheat	golgi, unclear	54.3	52.14
TraesCS7A01G222600.1	Wheat	golgi, unclear	54.3	51.99
HORVU3Hr1G070830.1	Barley	cytosol, peroxisome	24.93	48.28
EES17023	Sorghum	extracellular, plastid, vacuole	53.12	47.86
HORVU7Hr1G045620.2	Barley	cytosol, mitochondrion, peroxisome	21.36	46.75
KRH69845	Soybean	cytosol	43.62	44.95
KRH08141	Soybean	cytosol	41.54	42.81
HORVU3Hr1G035400.1	Barley	plastid	51.34	42.72
KRH25591	Soybean	cytosol	35.01	37.58
KRH22405	Soybean	cytoskeleton, cytosol, peroxisome	34.42	37.3
KRH55994	Soybean	cytosol	34.12	36.62
KRH55995	Soybean	nucleus	33.83	36.19
KRH26931	Soybean	cytoskeleton, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	29.08	35.13
KRH25546	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	34.12	33.92
KRH20490	Soybean	cytosol	30.86	33.44
KRH20488	Soybean	peroxisome	32.94	33.23
GSMUA_Achr3P24120_001	Banana	cytosol	58.75	31.23
KRG94755	Soybean	cytosol, peroxisome, plastid	25.52	29.55
KRH37569	Soybean	cytosol	14.54	27.07
KRH25547	Soybean	cytosol	11.87	26.67
KRH25548	Soybean	cytosol	13.35	25.57

Protein Annotations

EMBL:ACUP02012162	EnsemblPlants:KRG96772	EnsemblPlantsGene:GLYMA_19G231800	EntrezGene:100812169	Gene3D:3.40.50.1820	GO:GO:0003674
GO:GO:0003824	InterPro:AB_hydrolase	InterPro:AB_hydrolase_1	InterPro:Epox_hydrolase-like	InterPro:IPR029058	PANTHER:PTHR43329
PANTHER:PTHR43329:SF20	PFAM:PF00561	PRINTS:PR00412	ProteinID:KRG96772	ProteinID:KRG96772.1	SUPFAM:SSF53474
UniParc:UPI0006EDCCDF	UniProt:A0A0R0F3F2	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:48223838..48225501

Molecular Weight (calculated)

38168.5 Da

IEP (calculated)

5.955

GRAVY (calculated)

-0.185

Length

337 amino acids

Sequence
(BLAST)

001: MHAFINRVSY CCARDRGSEM EGIEHRTVEV NGIKMHVAEK GEGPVVLFLH GFPELWYSWR HQILSLSSLG YRAVAPDLRG YGDTEAPPSI SSYNCFHIVG
101: DLVALIDSLG VQQVFLVAHD WGAIIGWYLC MFRPDKVKAY VCLSVPFLRR DPNIRTVDGM RALYGDDYYV CRFQKPGEME AQMAEVGTGY VLKNILTSRK
201: TGPPFLPHGE FGTGFNPDMS DSLPSWLTED DLAYYVSKFE KTGFTGGLNY YRNFNLDWEL TAPWTGVQIK VPVKFITGEL DSVYTSLNLK EYIHGGGFKQ
301: DVPNLEQVIV QKGVAHFNNQ EAAEEINTHI YDFIKKF

Best Arabidopsis Sequence Match ( AT3G05600.1 )
(BLAST)

001: MEGIDHRMVS VNGITMHIAE KGPKEGPVVL LLHGFPDLWY TWRHQISGLS SLGYRAVAPD LRGYGDSDSP ESFSEYTCLN VVGDLVALLD SVAGNQEKVF
101: LVGHDWGAII GWFLCLFRPE KINGFVCLSV PYRSRNPKVK PVQGFKAVFG DDYYICRFQE PGKIEGEIAS ADPRIFLRNL FTGRTLGPPI LPKDNPFGEK
201: PNPNSENIEL PEWFSKKDLD FYVSKFEKAG FTGGLNYYRA MDLNWELTAP WTGAKIQVPV KFMTGDFDMV YTTPGMKEYI HGGGFAADVP TLQEIVVIED
301: AGHFVNQEKP QEVTAHINDF FTKLRDNNKS F

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9M9W5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.