CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

endoplasmic reticulum: 27224218
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68584	Soybean	nucleus	93.07	94.38
VIT_14s0128g00200.t01	Wine grape	extracellular, plasma membrane, vacuole	47.81	47.15
PGSC0003DMT400073646	Potato	endoplasmic reticulum, vacuole	45.27	45.48
Solyc01g098770.1.1	Tomato	extracellular	44.8	45.43
KRH71440	Soybean	extracellular	38.57	38.39
KRG92423	Soybean	nucleus	36.03	35.62
KRH34381	Soybean	endoplasmic reticulum, plasma membrane	36.03	35.14
KRH32004	Soybean	endoplasmic reticulum	22.4	34.64
KRH11387	Soybean	cytosol	25.87	31.73
KRH02113	Soybean	endoplasmic reticulum, vacuole	31.64	31.71
KRH51036	Soybean	plasma membrane, vacuole	30.02	31.4
KRH67173	Soybean	nucleus	30.72	31.15
KRH11388	Soybean	plasma membrane, vacuole	28.18	30.27
KRH20900	Soybean	extracellular, vacuole	29.79	30.07
KRH20901	Soybean	vacuole	27.71	29.78
KRH11386	Soybean	endoplasmic reticulum	28.87	29.69
KRH02114	Soybean	nucleus	30.48	29.33
KRH51876	Soybean	nucleus	30.02	29.28
KRH20899	Soybean	endoplasmic reticulum	29.33	26.85

Protein Annotations

MapMan:19.4.3.1	Gene3D:2.40.70.10	EntrezGene:547485	UniProt:A0A0R0F1F3	EMBL:AB084260	InterPro:Aspartic_peptidase_A1
EnsemblPlantsGene:GLYMA_19G236600	GO:GO:0003674	GO:GO:0003824	GO:GO:0004190	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	GO:GO:0045735
InterPro:IPR021109	InterPro:IPR033121	EnsemblPlants:KRG96855	ProteinID:KRG96855	ProteinID:KRG96855.1	InterPro:PEPTIDASE_A1
PFAM:PF14541	PFAM:PF14543	PFscan:PS51767	PANTHER:PTHR13683	PANTHER:PTHR13683:SF399	InterPro:Peptidase_aspartic_dom_sf
UniProt:Q8RVH5	SUPFAM:SSF50630	SignalP:SignalP-noTM	InterPro:TAXi_C	InterPro:TAXi_N	UniParc:UPI00000AC821
InterPro:Xylanase_inhibitor_I-like	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:48557753..48559237

Molecular Weight (calculated)

47207.7 Da

IEP (calculated)

8.321

GRAVY (calculated)

-0.078

Length

433 amino acids

Sequence
(BLAST)

001: MASILHYFLA LSLSFSFLFF LSDSVPIPQH HTNPTKPINL LVLPVQNDAS TGLHWANLQK RTPLMQVPVL VDLNGNHLWV NCEQHYSSKT YQAPFCHSTQ
101: CSRANTHQCL SCPAASRPGC HKNTCGLMST NPITQQTGLG ELGQDVLAIH ATQGSTQQLG PLVTVPQFLF SCAPSFLLQK GLPRNIQGVA GLGHAPISLP
201: NQLASHFGLQ HQFTTCLSRY PTSKGALIFG DAPNNMQQFH NQDIFHDLAF TPLTVTPQGE YNVRVSSIRI NQHSVFPPNK ISSTIVGSSG GTMISTSTPH
301: MVLQQSLYQA FTQVFAQQLE KQAQVKSVAP FGLCFNSNKI NAYPSVDLVM DKPNGPVWRI SGEDLMVQAQ PGVTCLGVMN GGMQPRAEVT LGTRQLEEKL
401: MVFDLARSRV GFSTSSLHSH GVKCGDLFNF ANA

Best Arabidopsis Sequence Match ( AT1G03220.1 )
(BLAST)

001: MAPSPIIFSV LLLFIFSLSS SAQTPFRPKA LLLPVTKDQS TLQYTTVINQ RTPLVPASVV FDLGGRELWV DCDKGYVSST YQSPRCNSAV CSRAGSTSCG
101: TCFSPPRPGC SNNTCGGIPD NTVTGTATSG EFALDVVSIQ STNGSNPGRV VKIPNLIFDC GATFLLKGLA KGTVGMAGMG RHNIGLPSQF AAAFSFHRKF
201: AVCLTSGKGV AFFGNGPYVF LPGIQISSLQ TTPLLINPVS TASAFSQGEK SSEYFIGVTA IQIVEKTVPI NPTLLKINAS TGIGGTKISS VNPYTVLESS
301: IYNAFTSEFV KQAAARSIKR VASVKPFGAC FSTKNVGVTR LGYAVPEIEL VLHSKDVVWR IFGANSMVSV SDDVICLGFV DGGVNARTSV VIGGFQLEDN
401: LIEFDLASNK FGFSSTLLGR QTNCANFNFT STA

Arabidopsis Description

Eukaryotic aspartyl protease family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZVS4]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.