CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 7
plasma membrane 6
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

endoplasmic reticulum: 27224218
nucleus: 27291164
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96855	Soybean	endoplasmic reticulum	94.38	93.07
VIT_14s0128g00200.t01	Wine grape	extracellular, plasma membrane, vacuole	48.01	46.7
Solyc01g098770.1.1	Tomato	extracellular	46.6	46.6
PGSC0003DMT400073646	Potato	endoplasmic reticulum, vacuole	46.84	46.4
KRH71440	Soybean	extracellular	39.34	38.62
KRG92423	Soybean	nucleus	37.24	36.3
KRH34381	Soybean	endoplasmic reticulum, plasma membrane	37.24	35.81
KRH32004	Soybean	endoplasmic reticulum	22.95	35.0
KRH02113	Soybean	endoplasmic reticulum, vacuole	32.79	32.41
KRH51036	Soybean	plasma membrane, vacuole	31.38	32.37
KRH11388	Soybean	plasma membrane, vacuole	29.74	31.51
KRH67173	Soybean	nucleus	30.91	30.91
KRH11387	Soybean	cytosol	25.53	30.88
KRH20901	Soybean	vacuole	29.04	30.77
KRH20900	Soybean	extracellular, vacuole	30.68	30.54
KRH11386	Soybean	endoplasmic reticulum	29.98	30.4
KRH02114	Soybean	nucleus	31.15	29.56
KRH51876	Soybean	nucleus	29.98	28.83
KRH20899	Soybean	endoplasmic reticulum	30.45	27.48

Protein Annotations

MapMan:19.4.3.1	Gene3D:2.40.70.10	PDB:3AUP	EntrezGene:547908	UniProt:A0A0R0KVB4	InterPro:Aspartic_peptidase_A1
ProteinID:BAA03681.1	EnsemblPlantsGene:GLYMA_03G239700	GO:GO:0003674	GO:GO:0003824	GO:GO:0004190	GO:GO:0005488
GO:GO:0005515	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016787
GO:GO:0019538	GO:GO:0030163	GO:GO:0042802	GO:GO:0045735	InterPro:IPR021109	InterPro:IPR033121
EnsemblPlants:KRH68584	ProteinID:KRH68584	ProteinID:KRH68584.1	UniProt:P13917	InterPro:PEPTIDASE_A1	PFAM:PF14541
PFAM:PF14543	PFscan:PS51767	PANTHER:PTHR13683	PANTHER:PTHR13683:SF399	InterPro:Peptidase_aspartic_dom_sf	SUPFAM:SSF50630
SignalP:SignalP-noTM	InterPro:TAXi_C	InterPro:TAXi_N	EMBL:U59425	UniParc:UPI0000124FA0	EMBL:X16469
InterPro:Xylanase_inhibitor_I-like	SEG:seg	:	:	:	:

Description

BGhypothetical protein

Coordinates

chr3:-:43835129..43838519

Molecular Weight (calculated)

46395.7 Da

IEP (calculated)

8.383

GRAVY (calculated)

-0.030

Length

427 amino acids

Sequence
(BLAST)

001: MASILHYFLA LSLSCSFLFF LSDSVTPTKP INLVVLPVQN DGSTGLHWAN LQKRTPLMQV PVLVDLNGNH LWVNCEQQYS SKTYQAPFCH STQCSRANTH
101: QCLSCPAASR PGCHKNTCGL MSTNPITQQT GLGELGEDVL AIHATQGSTQ QLGPLVTVPQ FLFSCAPSFL VQKGLPRNTQ GVAGLGHAPI SLPNQLASHF
201: GLQRQFTTCL SRYPTSKGAI IFGDAPNNMR QFQNQDIFHD LAFTPLTITL QGEYNVRVNS IRINQHSVFP LNKISSTIVG STSGGTMIST STPHMVLQQS
301: VYQAFTQVFA QQLPKQAQVK SVAPFGLCFN SNKINAYPSV DLVMDKPNGP VWRISGEDLM VQAQPGVTCL GVMNGGMQPR AEITLGARQL EENLVVFDLA
401: RSRVGFSTSS LHSHGVKCAD LFNFANA

Best Arabidopsis Sequence Match ( AT1G03220.1 )
(BLAST)

001: MAPSPIIFSV LLLFIFSLSS SAQTPFRPKA LLLPVTKDQS TLQYTTVINQ RTPLVPASVV FDLGGRELWV DCDKGYVSST YQSPRCNSAV CSRAGSTSCG
101: TCFSPPRPGC SNNTCGGIPD NTVTGTATSG EFALDVVSIQ STNGSNPGRV VKIPNLIFDC GATFLLKGLA KGTVGMAGMG RHNIGLPSQF AAAFSFHRKF
201: AVCLTSGKGV AFFGNGPYVF LPGIQISSLQ TTPLLINPVS TASAFSQGEK SSEYFIGVTA IQIVEKTVPI NPTLLKINAS TGIGGTKISS VNPYTVLESS
301: IYNAFTSEFV KQAAARSIKR VASVKPFGAC FSTKNVGVTR LGYAVPEIEL VLHSKDVVWR IFGANSMVSV SDDVICLGFV DGGVNARTSV VIGGFQLEDN
401: LIEFDLASNK FGFSSTLLGR QTNCANFNFT STA

Arabidopsis Description

Eukaryotic aspartyl protease family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZVS4]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.