CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 8
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0104g00190.t01	Wine grape	cytosol	15.93	66.02
Solyc09g065000.2.1	Tomato	endoplasmic reticulum, vacuole	45.9	45.48
PGSC0003DMT400003025	Potato	endoplasmic reticulum, plasma membrane	45.43	45.12
KRH71440	Soybean	extracellular	38.17	37.47
KRG92423	Soybean	nucleus	36.53	35.62
KRH11387	Soybean	cytosol	28.81	34.84
KRH51036	Soybean	plasma membrane, vacuole	33.72	34.78
KRH34381	Soybean	endoplasmic reticulum, plasma membrane	36.07	34.68
KRH32004	Soybean	endoplasmic reticulum	22.72	34.64
KRH20901	Soybean	vacuole	31.62	33.5
KRH11388	Soybean	plasma membrane, vacuole	31.62	33.5
KRH02113	Soybean	endoplasmic reticulum, vacuole	33.72	33.33
KRH02114	Soybean	nucleus	34.89	33.11
KRH68584	Soybean	nucleus	30.91	30.91
KRG96855	Soybean	endoplasmic reticulum	31.15	30.72
KRH51876	Soybean	nucleus	31.38	30.18
KRH11386	Soybean	endoplasmic reticulum	28.81	29.22
KRH20899	Soybean	endoplasmic reticulum	32.08	28.96
KRH20900	Soybean	extracellular, vacuole	28.81	28.67

Protein Annotations

EntrezGene:100800584	MapMan:19.4.3.1	Gene3D:2.40.70.10	EMBL:ACUP02002041	InterPro:Aspartic_peptidase_A1	EnsemblPlantsGene:GLYMA_03G151900
GO:GO:0003674	GO:GO:0003824	GO:GO:0004190	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	UniProt:I1JNS6	InterPro:IPR021109
InterPro:IPR033121	EnsemblPlants:KRH67173	ProteinID:KRH67173	ProteinID:KRH67173.1	InterPro:PEPTIDASE_A1	PFAM:PF14541
PFAM:PF14543	PFscan:PS51767	PANTHER:PTHR13683	PANTHER:PTHR13683:SF402	InterPro:Peptidase_aspartic_dom_sf	SUPFAM:SSF50630
SignalP:SignalP-noTM	InterPro:TAXi_C	InterPro:TAXi_N	UniParc:UPI0002336C42	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:36700097..36701947

Molecular Weight (calculated)

45960.8 Da

IEP (calculated)

5.084

GRAVY (calculated)

0.216

Length

427 amino acids

Sequence
(BLAST)

001: MPPPLPSLCN FNLAILFLFL TPTFQIPLIA PISKDDTTQL YTLSVFLKTP LQPTKLHLHL GSSLSWVLCD STYTSSSSHH IPCNTPLCNS FPSNACSNNS
101: SLCALFPENP VTRNTLLDTA LIDSLALPTY DASSSLVLIS DFIFSCATAH LLQGLAANAL GLASLGRSNY SLPAQISTSL TSPRSFTLCL PASSANTGAA
201: IFASTASSFL FSSKIDLTYT QLIVNPVADT VVTDNPQPSD EYFINLTSIK INGKPLYINS SILTVDQTGF GGTKISTAEP YTVLETSIYR LFVQRFVNES
301: SAFNLTVTEA VEPFGVCYPA GDLTETRVGP AVPTVDLVMH SEDVFWRIFG GNSMVRVAKG GVDVWCLGFV DGGTRGRTPI VIGGHQLEDN LMQFDLDSNR
401: FGFTSTLLLQ DAKCSNLKVN NFANGIK

Best Arabidopsis Sequence Match ( AT1G03220.1 )
(BLAST)

001: MAPSPIIFSV LLLFIFSLSS SAQTPFRPKA LLLPVTKDQS TLQYTTVINQ RTPLVPASVV FDLGGRELWV DCDKGYVSST YQSPRCNSAV CSRAGSTSCG
101: TCFSPPRPGC SNNTCGGIPD NTVTGTATSG EFALDVVSIQ STNGSNPGRV VKIPNLIFDC GATFLLKGLA KGTVGMAGMG RHNIGLPSQF AAAFSFHRKF
201: AVCLTSGKGV AFFGNGPYVF LPGIQISSLQ TTPLLINPVS TASAFSQGEK SSEYFIGVTA IQIVEKTVPI NPTLLKINAS TGIGGTKISS VNPYTVLESS
301: IYNAFTSEFV KQAAARSIKR VASVKPFGAC FSTKNVGVTR LGYAVPEIEL VLHSKDVVWR IFGANSMVSV SDDVICLGFV DGGVNARTSV VIGGFQLEDN
401: LIEFDLASNK FGFSSTLLGR QTNCANFNFT STA

Arabidopsis Description

Eukaryotic aspartyl protease family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZVS4]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.