CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34381	Soybean	endoplasmic reticulum, plasma membrane	90.18	88.96
VIT_05s0020g02730.t01	Wine grape	plasma membrane, vacuole	61.87	62.3
KRH71440	Soybean	extracellular	59.13	59.54
Solyc01g080010.2.1	Tomato	extracellular	59.13	59.13
PGSC0003DMT400023183	Potato	extracellular	57.53	57.67
GSMUA_Achr8P09510_001	Banana	endoplasmic reticulum, extracellular	35.16	57.04
KRH32004	Soybean	endoplasmic reticulum	34.47	53.93
HORVU1Hr1G061380.1	Barley	extracellular, golgi	46.35	47.21
TraesCS1D01G251700.1	Wheat	extracellular, golgi	46.58	46.79
TraesCS1A01G251900.1	Wheat	endoplasmic reticulum, extracellular	46.35	46.67
TraesCS1B01G263100.1	Wheat	endoplasmic reticulum, extracellular	45.89	46.21
Zm00001d038151_P001	Maize	extracellular	45.89	45.89
OQU77960	Sorghum	endoplasmic reticulum, extracellular	46.58	45.33
Os05t0403000-01	Rice	extracellular	44.98	45.08
Os05t0403100-00	Rice	extracellular	35.62	44.7
Os05t0402900-01	Rice	extracellular	44.52	44.62
Os05t0403300-01	Rice	golgi	45.43	43.74
KRH02114	Soybean	nucleus	41.1	40.0
KRH51036	Soybean	plasma membrane, vacuole	36.53	38.65
KRH02113	Soybean	endoplasmic reticulum, vacuole	36.76	37.27
KRH68584	Soybean	nucleus	36.3	37.24
KRH67173	Soybean	nucleus	35.62	36.53
KRG96855	Soybean	endoplasmic reticulum	35.62	36.03
KRH20901	Soybean	vacuole	32.88	35.73
KRH11388	Soybean	plasma membrane, vacuole	32.42	35.24
KRH11387	Soybean	cytosol	28.31	35.13
KRH51876	Soybean	nucleus	34.93	34.46
KRH20900	Soybean	extracellular, vacuole	33.33	34.03
KRH11386	Soybean	endoplasmic reticulum	30.82	32.07
KRH20899	Soybean	endoplasmic reticulum	33.79	31.29

Protein Annotations

EntrezGene:100809706	MapMan:19.4.3.1	Gene3D:2.40.70.10	UniProt:A0A0R0ENW6	EMBL:ACUP02012753	InterPro:Aspartic_peptidase_A1
EnsemblPlantsGene:GLYMA_20G210100	GO:GO:0003674	GO:GO:0003824	GO:GO:0004190	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	InterPro:IPR021109	InterPro:IPR033121	EnsemblPlants:KRG92423
ProteinID:KRG92423	ProteinID:KRG92423.1	InterPro:PEPTIDASE_A1	PFAM:PF14541	PFAM:PF14543	PFscan:PS51767
PANTHER:PTHR13683	PANTHER:PTHR13683:SF532	InterPro:Peptidase_aspartic_dom_sf	SUPFAM:SSF50630	SignalP:SignalP-noTM	InterPro:TAXi_C
InterPro:TAXi_N	TMHMM:TMhelix	UniParc:UPI00018C6C71	InterPro:Xylanase_inhibitor_I-like	SEG:seg	:

Description

hypothetical protein

Coordinates

chr20:-:44612750..44614438

Molecular Weight (calculated)

46355.6 Da

IEP (calculated)

8.663

GRAVY (calculated)

0.268

Length

438 amino acids

Sequence
(BLAST)

001: MAASVKLLFL SFLSLFISFS IAQTSFRPKA LVLPVTKDVS ASVPQYVTQI KQRTPLVAVK LTVDLGGGYL WVNCEKGYVS STSRPARCGS AQCSLFGLYG
101: CSTEDKICGR SPSNTVTGVS TYGDIHADVV AVNSTDGNNP TKVVSVPKFL FICGSNVVQK GLASGVTGMA GLGRTKVSLP SQFASAFSFH RKFAICLSSS
201: TMTNGVMFFG DGPYNFGYLN SDLSKVLTFT PLISNPVSTA PSYFQGEPSV EYFIGVKSIK VSDKNVALNT TLLSIDRNGI GGTKISTVNP YTVMETTIYK
301: AVSEVFVKEV GAPTVAPVAP FGTCFATKDI GSTRMGPAVP GIDLVLQNDV VWTIIGANSM VYVNDVICLG FVDAGSSPSV AQVGFVAGGS HPRTSITIGA
401: HQLENNLLQF DLATSRLGFR SIFFDHSNCA NFNFTSSA

Best Arabidopsis Sequence Match ( AT1G03220.1 )
(BLAST)

001: MAPSPIIFSV LLLFIFSLSS SAQTPFRPKA LLLPVTKDQS TLQYTTVINQ RTPLVPASVV FDLGGRELWV DCDKGYVSST YQSPRCNSAV CSRAGSTSCG
101: TCFSPPRPGC SNNTCGGIPD NTVTGTATSG EFALDVVSIQ STNGSNPGRV VKIPNLIFDC GATFLLKGLA KGTVGMAGMG RHNIGLPSQF AAAFSFHRKF
201: AVCLTSGKGV AFFGNGPYVF LPGIQISSLQ TTPLLINPVS TASAFSQGEK SSEYFIGVTA IQIVEKTVPI NPTLLKINAS TGIGGTKISS VNPYTVLESS
301: IYNAFTSEFV KQAAARSIKR VASVKPFGAC FSTKNVGVTR LGYAVPEIEL VLHSKDVVWR IFGANSMVSV SDDVICLGFV DGGVNARTSV VIGGFQLEDN
401: LIEFDLASNK FGFSSTLLGR QTNCANFNFT STA

Arabidopsis Description

Eukaryotic aspartyl protease family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZVS4]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.