CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0609400-01	Rice	cytosol, extracellular	21.37	47.37
KRH51225	Soybean	extracellular, plasma membrane	91.56	44.89
VIT_00s0878g00010.t01	Wine grape	cytosol, nucleus	62.8	41.46
KRH11105	Soybean	cytosol	36.15	38.7
GSMUA_Achr4P11390_001	Banana	cytosol	58.84	30.63
KRH01047	Soybean	cytosol	46.7	29.7
GSMUA_Achr4P01730_001	Banana	cytosol	59.63	29.24
Zm00001d043731_P001	Maize	plastid	49.6	29.15
KRH58852	Soybean	nucleus	59.37	29.11
KRH42754	Soybean	extracellular, vacuole	59.1	28.98
Zm00001d020867_P001	Maize	cytosol	51.72	28.95
CDY40408	Canola	extracellular	58.58	28.91
CDY37334	Canola	extracellular	58.58	28.87
Bra014350.1-P	Field mustard	extracellular	58.05	28.65
GSMUA_Achr4P03940_001	Banana	extracellular, plasma membrane	54.88	27.73
GSMUA_Achr7P06110_001	Banana	extracellular	54.35	27.65
AT5G59810.1	Thale cress	mitochondrion	56.46	27.51
Os01t0702300-00	Rice	extracellular	51.45	27.12
KRH03962	Soybean	extracellular, vacuole	55.15	27.07
GSMUA_Achr4P13160_001	Banana	endoplasmic reticulum, extracellular	51.45	26.71
Zm00001d046793_P001	Maize	extracellular, vacuole	53.83	25.99
TraesCS6A01G161600.1	Wheat	extracellular	52.77	25.45
HORVU6Hr1G032770.4	Barley	plastid	53.3	25.38
TraesCS5D01G264000.1	Wheat	nucleus	54.09	25.28
HORVU5Hr1G071510.2	Barley	extracellular, plasma membrane	54.09	25.25
TraesCS5B01G255200.1	Wheat	extracellular, plasma membrane	53.83	25.19
TraesCS5D01G033200.1	Wheat	cytosol	49.6	25.13
KXG35865	Sorghum	extracellular, mitochondrion	53.83	25.0
TraesCS5A01G255900.1	Wheat	extracellular, mitochondrion, vacuole	53.56	24.97
TraesCS3A01G254900.1	Wheat	vacuole	50.4	24.9
TraesCS3D01G255800.1	Wheat	vacuole	49.34	24.9
EER88633	Sorghum	cytosol, extracellular, mitochondrion, plasma membrane	52.51	24.88
Os02t0198700-01	Rice	plasma membrane	52.24	24.78
Os09t0479900-01	Rice	golgi	52.51	24.72
TraesCS2B01G050700.2	Wheat	cytosol	45.65	24.71
Zm00001d015798_P001	Maize	plastid	53.83	24.7
HORVU3Hr1G065810.1	Barley	plasma membrane	50.13	24.61
TraesCS5B01G024600.1	Wheat	extracellular, plasma membrane, vacuole	49.6	24.35
KXG33202	Sorghum	extracellular, plasma membrane, vacuole	51.45	24.16
TraesCS7B01G283300.1	Wheat	extracellular, plasma membrane	50.4	23.93
TraesCS7A01G381400.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	50.13	23.81
TraesCS7D01G377700.1	Wheat	extracellular, plasma membrane	50.66	23.76
HORVU5Hr1G007190.1	Barley	extracellular, golgi	50.13	23.69
KRH01628	Soybean	nucleus	44.85	23.51
TraesCS2B01G050800.1	Wheat	extracellular, plasma membrane	48.02	23.48
KRH14769	Soybean	extracellular	48.55	23.38
HORVU7Hr1G090870.1	Barley	extracellular, plasma membrane, plastid	49.87	23.36
KRH40182	Soybean	extracellular, vacuole	48.28	23.25
HORVU2Hr1G005550.3	Barley	extracellular, plasma membrane, plastid	47.49	23.17
TraesCS2D01G036400.1	Wheat	plasma membrane	47.49	23.17
Zm00001d034924_P001	Maize	plastid	48.28	23.14
KRH58046	Soybean	extracellular, vacuole	45.91	23.05
KRH14773	Soybean	endoplasmic reticulum, extracellular, vacuole	47.49	22.99
TraesCS2A01G037100.1	Wheat	plasma membrane	46.97	22.91
EER90461	Sorghum	extracellular, golgi	47.76	22.82
OQU84580	Sorghum	mitochondrion	53.56	22.81
KRH04480	Soybean	endoplasmic reticulum	45.65	22.76
KRH14771	Soybean	nucleus	46.7	22.61
HORVU2Hr1G005560.1	Barley	extracellular	45.91	22.34
KRH70486	Soybean	nucleus	45.38	22.28
KRH01039	Soybean	nucleus	46.97	22.11
KRH21143	Soybean	nucleus	45.38	21.8
TraesCS2D01G036500.1	Wheat	plasma membrane	45.91	21.72
TraesCS3B01G286900.1	Wheat	extracellular, plasma membrane	44.59	21.67
KRH02601	Soybean	cytosol, nucleus	40.37	21.61
KRH28401	Soybean	extracellular	43.8	21.56
KRH24297	Soybean	nucleus	43.8	21.47
KRG91405	Soybean	nucleus	44.06	21.38
KRH60704	Soybean	extracellular, plasma membrane	43.54	21.24
KRH05609	Soybean	extracellular, vacuole	43.27	21.11
KRH35414	Soybean	nucleus	43.54	21.1
KRH15432	Soybean	nucleus	43.01	21.06
KRH69016	Soybean	extracellular, plasma membrane	42.74	21.04
GSMUA_Achr1P19410_001	Banana	extracellular, vacuole	40.11	20.99
KRH61386	Soybean	nucleus	42.48	20.91
KRH19326	Soybean	extracellular, vacuole	41.42	20.91
KRH38672	Soybean	nucleus	42.74	20.88
KRH52072	Soybean	nucleus	42.22	20.81
KRH62506	Soybean	extracellular	35.88	20.67
KRG97289	Soybean	extracellular, plasma membrane	41.69	20.57
KRH09188	Soybean	nucleus	42.22	20.49
KRH47618	Soybean	extracellular	41.69	20.39
KRH06267	Soybean	plasma membrane	41.69	20.36
KRH37498	Soybean	nucleus	41.16	20.26
KRH47696	Soybean	extracellular, nucleus	41.42	20.08
KRH76515	Soybean	extracellular	39.05	19.1
KRH06199	Soybean	endoplasmic reticulum, nucleus	41.95	11.14
KRH12543	Soybean	extracellular, golgi	8.97	7.3
KRH01042	Soybean	endoplasmic reticulum	0.0	0.0

Protein Annotations

Gene3D:2.60.40.2310	Gene3D:3.40.50.200	Gene3D:3.50.30.30	MapMan:35.1	EMBL:ACUP02010292	EnsemblPlantsGene:GLYMA_17G004100
GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	GO:GO:0019538	InterPro:IPR036852	UniProt:K7MJ92	EnsemblPlants:KRH01924	ProteinID:KRH01924
ProteinID:KRH01924.1	InterPro:PA_domain	PFAM:PF00082	PFAM:PF02225	ScanProsite:PS00138	PANTHER:PTHR10795
PANTHER:PTHR10795:SF423	InterPro:Peptidase_S8/S53_dom	InterPro:Peptidase_S8/S53_dom_sf	InterPro:Peptidase_S8_Ser-AS	SUPFAM:SSF52025	SUPFAM:SSF52743
UniParc:UPI000296F8F4	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:419504..422029

Molecular Weight (calculated)

40952.4 Da

IEP (calculated)

8.907

GRAVY (calculated)

-0.112

Length

379 amino acids

Sequence
(BLAST)

001: MWDFLTENTT LCMRGTIDPE KARGKILVCL RGVTARVEKS LVALKAGAAG MILCNDELSG NELIADPHLL PASQINYEDG LAVYAYMNST KNPLGYIDPP
101: KTKLQIKPAP SMAAFSSRGP NIVTPEILKP DVTAPGVNII AAYSEGVSPT DMNFDKRRVP FITMSGTSMS CPHVAGVVGL LKTLHPDWSP TVIKSALLTT
201: ARTRDNTGKP MLDGGNNANA TPFAYGSGHI RPNRAMDPGL VYDLTNNDYL NFLCVSGYNQ SQIEMFSGAH YRCPDIINIL DFNYPTITIP KLYGSVSLTR
301: RVKNVGSPGT YTARLKVPVG LSISVEPNVL KFDNIGEEKS FKLTVEVTRP GVATTFGGIT WSDGKHQVRS QIVVGGVRG

Best Arabidopsis Sequence Match ( AT2G04160.1 )
(BLAST)

001: MKLTHNFSFL LLLLLVHMSS KHILASKDSS SYVVYFGAHS HVGEITEDAM DRVKETHYDF LGSFTGSRER ATDAIFYSYT KHINGFAAHL DHDLAYEISK
101: HPEVVSVFPN KALKLHTTRS WDFLGLEHNS YVPSSSIWRK ARFGEDTIIA NLDTGVWPES KSFRDEGLGP IPSRWKGICQ NQKDATFHCN RKLIGARYFN
201: KGYAAAVGHL NSSFDSPRDL DGHGSHTLST AAGDFVPGVS IFGQGNGTAK GGSPRARVAA YKVCWPPVKG NECYDADVLA AFDAAIHDGA DVISVSLGGE
301: PTSFFNDSVA IGSFHAAKKR IVVVCSAGNS GPADSTVSNV APWQITVGAS TMDREFASNL VLGNGKHYKG QSLSSTALPH AKFYPIMASV NAKAKNASAL
401: DAQLCKLGSL DPIKTKGKIL VCLRGQNGRV EKGRAVALGG GIGMVLENTY VTGNDLLADP HVLPATQLTS KDSFAVSRYI SQTKKPIAHI TPSRTDLGLK
501: PAPVMASFSS KGPSIVAPQI LKPDITAPGV SVIAAYTGAV SPTNEQFDPR RLLFNAISGT SMSCPHISGI AGLLKTRYPS WSPAAIRSAI MTTATIMDDI
601: PGPIQNATNM KATPFSFGAG HVQPNLAVNP GLVYDLGIKD YLNFLCSLGY NASQISVFSG NNFTCSSPKI SLVNLNYPSI TVPNLTSSKV TVSRTVKNVG
701: RPSMYTVKVN NPQGVYVAVK PTSLNFTKVG EQKTFKVILV KSKGNVAKGY VFGELVWSDK KHRVRSPIVV KL

Arabidopsis Description

AIR3Subtilisin-like protease SBT5.3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSP5]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.