CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50716	Soybean	nucleus	65.09	67.9
KRH02368	Soybean	cytosol	54.44	62.37
KRH02369	Soybean	cytosol	48.52	49.25
VIT_05s0077g00850.t01	Wine grape	nucleus	50.3	46.96
PGSC0003DMT400011956	Potato	cytosol	43.2	45.48
KRH26136	Soybean	cytosol	33.73	37.5
Solyc01g079290.1.1	Tomato	cytosol	27.22	32.39
KRH26135	Soybean	cytosol	37.28	32.39
KRH58633	Soybean	cytosol, nucleus	36.39	27.46
KRH42541	Soybean	nucleus	36.39	25.95
KRH27240	Soybean	cytosol	39.35	18.89
KRH22096	Soybean	cytosol	39.65	18.53
KRH55293	Soybean	cytosol, peroxisome, plastid	37.28	14.5
KRH21442	Soybean	nucleus	39.35	14.47
KRH10881	Soybean	nucleus	39.35	14.39
KRH20454	Soybean	cytosol, nucleus, peroxisome	39.35	14.26
KRH50043	Soybean	cytosol	38.17	13.92
KRG90672	Soybean	nucleus	34.62	10.41
KRH36075	Soybean	nucleus	0.0	0.0

Protein Annotations

EntrezGene:100810318	Gene3D:3.10.110.10	MapMan:35.1	EMBL:ACUP02010303	EnsemblPlantsGene:GLYMA_17G034200	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031625	GO:GO:0061630
InterPro:IPR000608	InterPro:IPR016135	UniProt:K7MJQ9	EnsemblPlants:KRH02367	ProteinID:KRH02367	ProteinID:KRH02367.1
PFAM:PF00179	PFscan:PS50127	PANTHER:PTHR44273	PANTHER:PTHR44273:SF4	SMART:SM00212	SUPFAM:SSF54495
TMHMM:TMhelix	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000233F229	SEG:seg	:

Description

hypothetical protein

Coordinates

chr17:-:2496617..2497633

Molecular Weight (calculated)

38915.5 Da

IEP (calculated)

6.438

GRAVY (calculated)

-0.223

Length

338 amino acids

Sequence
(BLAST)

001: MQQPLRNAIE VTTNEFGQFD VVSDDSDHHF LGSEKGKCFT DSKSEAYRTI MREWRILEHN LPESIYVRVY ERRIDLMRAV IVGAAGTPYH DGLFFFDILF
101: PSDYPKHPPK LHFDSFGLQV NPNLHPSGEV CLSLLNTWYG KKREKWDPSG STMLQVLLSL QSLVLNENPY FNEPGATTLG RLINLESTSR VYNEDVFTQT
201: CKISFHLLQD PPRNFEAFVS AHFRERASLI LAACNEYANG RVRVGYYSSD HLPPLSRVQV SRSFKKQMIE FYPLLLRAFR QNDNASLGGF VQHLELETEE
301: SEYKSTEIIE EVVNKIVIGS LIFLICLVSY LLLKRLVF

Best Arabidopsis Sequence Match ( AT1G53023.1 )
(BLAST)

001: MVEIKDSSNV RKLKEEFLRD FKRFDTVEDF SDHHYAAEGS PAKLSLWHLK FKGRPKNWVK DIQKEWKILD KNLPETIFVR ACESRIDLLR AVIIGAEGTP
101: YHDGLFFFDI QFPDTYPSVP PKVHYHSGGL RINPNLYKCG KVCLSLISTW TGKKREKWLP KESTMLQLLV SIQALILNEK PYYNEPGYEK SMGTPLGESY
201: SKDYSENVFV FSLKTMHFEE FVRSHFFVRS HDIVKACNAY KDGAPVGSID KGGVKKQTRQ RGSLKFRINV TSFMKTVVDE FVNLGAIREA NHRGEPNPTL
301: FSCFFFCYLE LIICSV

Arabidopsis Description

UBC39Putative ubiquitin-conjugating enzyme E2 39 [Source:UniProtKB/Swiss-Prot;Acc:F4HPP7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.