CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 1
golgi 2
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

nucleus: 21132161
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49937	Soybean	endoplasmic reticulum	95.18	95.37
VIT_00s0181g00010.t01	Wine grape	plasma membrane	81.7	81.7
Bra031762.1-P	Field mustard	plasma membrane	80.15	79.85
AT1G11260.1	Thale cress	plasma membrane	80.15	79.69
CDY34842	Canola	plasma membrane	79.96	79.65
CDY19352	Canola	plasma membrane	79.96	79.5
Bra019870.1-P	Field mustard	plasma membrane	79.77	79.31
CDX97945	Canola	plasma membrane	79.77	79.31
PGSC0003DMT400057709	Potato	plasma membrane	78.61	78.01
Solyc02g079220.2.1	Tomato	nucleus	78.42	77.82
PGSC0003DMT400012931	Potato	plasma membrane	78.42	77.67
Solyc03g006650.1.1	Tomato	plasma membrane	76.69	76.83
CDY34655	Canola	plasma membrane	79.96	74.51
KRH27830	Soybean	plasma membrane	65.51	66.41
KRH71016	Soybean	plasma membrane	61.08	62.52
KRH40901	Soybean	plasma membrane	60.89	61.72
KRH40905	Soybean	plasma membrane	60.69	61.52
KRH07765	Soybean	plasma membrane	60.5	61.33
KRG90624	Soybean	plasma membrane	60.31	61.25
KRH36130	Soybean	plasma membrane	60.12	61.06
KRH75177	Soybean	plasma membrane	61.46	59.51
KRH35542	Soybean	plasma membrane	52.02	56.84
KRH56314	Soybean	plasma membrane	54.53	56.49
KRH27626	Soybean	peroxisome, plasma membrane, vacuole	56.26	55.94
KRH77866	Soybean	peroxisome, plasma membrane, vacuole	56.26	55.94
KRH12902	Soybean	plasma membrane	53.76	55.25
KRH35541	Soybean	peroxisome, plasma membrane, vacuole	53.18	55.2
KRG91268	Soybean	plasma membrane	54.34	55.08
KRH56317	Soybean	plasma membrane	52.99	53.92
KRH37895	Soybean	cytosol, peroxisome, plasma membrane	36.8	53.65
KRH53073	Soybean	plasma membrane	51.06	52.06
KRH62356	Soybean	plasma membrane	50.87	51.87
KRH76334	Soybean	plasma membrane	50.48	51.37
KRH62355	Soybean	plasma membrane	49.9	50.98
KRH60234	Soybean	mitochondrion	50.1	50.88
KRH41519	Soybean	plasma membrane	50.1	50.88
KRH39352	Soybean	plasma membrane	50.1	50.78
KRH62357	Soybean	plasma membrane	49.52	50.69
KRH16713	Soybean	plasma membrane	48.94	50.0
KRH18902	Soybean	plasma membrane	47.98	49.6
KRH16714	Soybean	plasma membrane	47.59	48.72

Protein Annotations

Gene3D:1.20.1250.20	EntrezGene:100801060	MapMan:24.2.2.1.6	EMBL:ACUP02004782	EnsemblPlantsGene:GLYMA_08G059700	GO:GO:0003674
GO:GO:0005215	GO:GO:0005351	GO:GO:0005355	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0015992	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0035428	GO:GO:0046323
GO:GO:0055085	GO:GO:1902600	GO:GO:1904659	UniProt:I1KQQ8	InterPro:IPR020846	EnsemblPlants:KRH41938
ProteinID:KRH41938	ProteinID:KRH41938.1	InterPro:MFS_dom	InterPro:MFS_sugar_transport-like	InterPro:MFS_trans_sf	PFAM:PF00083
PRINTS:PR00171	ScanProsite:PS00216	ScanProsite:PS00217	PFscan:PS50850	PANTHER:PTHR23500	PANTHER:PTHR23500:SF357
SUPFAM:SSF103473	InterPro:Sugar/inositol_transpt	InterPro:Sugar_transporter_CS	TIGRFAMs:TIGR00879	TMHMM:TMhelix	UniParc:UPI000233826A
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:4590791..4594474

Molecular Weight (calculated)

57299.7 Da

IEP (calculated)

9.039

GRAVY (calculated)

0.513

Length

519 amino acids

Sequence
(BLAST)

001: MPAVGGISNG GGKEYPGSLT PFVTVTCIVA AMGGLIFGYD IGISGGVTSM DPFLLKFFPS VFRKKNSDKT VNQYCQYDSQ TLTMFTSSLY LAALLSSLVA
101: STVTRRFGRK LSMLFGGLLF LVGALINGFA QHVWMLIVGR ILLGFGIGFA NQSVPLYLSE MAPYKYRGAL NIGFQLSITV GILVANVLNY FFAKIHGGWG
201: WRLSLGGAMV PALIITIGSL VLPDTPNSMI ERGDREKAKA QLRRVRGIDD VEEEFNDLVA ASESSRKVEH PWRNLLQRKY RPHLTMAVLI PFFQQLTGIN
301: VIMFYAPVLF SSIGFKDDSA LMSAVITGVV NVVATCVSIY GVDKWGRRAL FLEGGVQMVI CQAVVAAAIG AKFGIDGNPG DLPKWYAVVV VLFICIYVSA
401: FAWSWGPLGW LVPSEIFPLE IRSAAQSINV SVNMFFTFLI AQVFLTMLCH MKFGLFIFFA FFVLIMTFFI YFFLPETKGI PIEEMNQVWK AHPFWSRFVE
501: NDDYGNGVEM GRGTAIKEV

Best Arabidopsis Sequence Match ( AT1G11260.1 )
(BLAST)

001: MPAGGFVVGD GQKAYPGKLT PFVLFTCVVA AMGGLIFGYD IGISGGVTSM PSFLKRFFPS VYRKQQEDAS TNQYCQYDSP TLTMFTSSLY LAALISSLVA
101: STVTRKFGRR LSMLFGGILF CAGALINGFA KHVWMLIVGR ILLGFGIGFA NQAVPLYLSE MAPYKYRGAL NIGFQLSITI GILVAEVLNY FFAKIKGGWG
201: WRLSLGGAVV PALIITIGSL VLPDTPNSMI ERGQHEEAKT KLRRIRGVDD VSQEFDDLVA ASKESQSIEH PWRNLLRRKY RPHLTMAVMI PFFQQLTGIN
301: VIMFYAPVLF NTIGFTTDAS LMSAVVTGSV NVAATLVSIY GVDRWGRRFL FLEGGTQMLI CQAVVAACIG AKFGVDGTPG ELPKWYAIVV VTFICIYVAG
401: FAWSWGPLGW LVPSEIFPLE IRSAAQSITV SVNMIFTFII AQIFLTMLCH LKFGLFLVFA FFVVVMSIFV YIFLPETKGI PIEEMGQVWR SHWYWSRFVE
501: DGEYGNALEM GKNSNQAGTK HV

Arabidopsis Description

STP1STP1 [Source:UniProtKB/TrEMBL;Acc:A0A178WJ63]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.