CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 1
golgi 2
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41938	Soybean	mitochondrion, nucleus	95.37	95.18
VIT_00s0181g00010.t01	Wine grape	plasma membrane	82.43	82.27
Bra031762.1-P	Field mustard	plasma membrane	81.47	81.0
CDY34842	Canola	plasma membrane	81.27	80.81
AT1G11260.1	Thale cress	plasma membrane	81.27	80.65
CDY19352	Canola	plasma membrane	81.27	80.65
Bra019870.1-P	Field mustard	plasma membrane	81.08	80.46
CDX97945	Canola	plasma membrane	81.08	80.46
PGSC0003DMT400057709	Potato	plasma membrane	79.73	78.97
PGSC0003DMT400012931	Potato	plasma membrane	78.96	78.05
Solyc02g079220.2.1	Tomato	nucleus	78.76	78.01
Solyc03g006650.1.1	Tomato	plasma membrane	77.22	77.22
CDY34655	Canola	plasma membrane	81.27	75.58
KRH27830	Soybean	plasma membrane	66.02	66.8
KRH71016	Soybean	plasma membrane	62.16	63.51
KRH07765	Soybean	plasma membrane	61.39	62.11
KRG90624	Soybean	plasma membrane	61.2	62.04
KRH36130	Soybean	plasma membrane	60.81	61.64
KRH40901	Soybean	plasma membrane	60.81	61.52
KRH40905	Soybean	plasma membrane	60.62	61.33
KRH75177	Soybean	plasma membrane	62.74	60.63
KRH35542	Soybean	plasma membrane	52.32	57.05
KRH12902	Soybean	plasma membrane	55.6	57.03
KRH56314	Soybean	plasma membrane	55.02	56.89
KRH77866	Soybean	peroxisome, plasma membrane, vacuole	56.76	56.32
KRH27626	Soybean	peroxisome, plasma membrane, vacuole	56.56	56.13
KRH35541	Soybean	peroxisome, plasma membrane, vacuole	53.47	55.4
KRG91268	Soybean	plasma membrane	54.63	55.27
KRH56317	Soybean	plasma membrane	53.86	54.71
KRH37895	Soybean	cytosol, peroxisome, plasma membrane	37.26	54.21
KRH53073	Soybean	plasma membrane	51.35	52.26
KRH62356	Soybean	plasma membrane	51.16	52.06
KRH41519	Soybean	plasma membrane	51.16	51.86
KRH76334	Soybean	plasma membrane	50.77	51.57
KRH60234	Soybean	mitochondrion	50.77	51.47
KRH39352	Soybean	plasma membrane	50.39	50.98
KRH62355	Soybean	plasma membrane	49.81	50.79
KRH62357	Soybean	plasma membrane	49.42	50.49
KRH16713	Soybean	plasma membrane	48.46	49.41
KRH18902	Soybean	plasma membrane	47.68	49.2
KRH16714	Soybean	plasma membrane	47.68	48.72

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.1.6	UniProt:A0A0R0J555	EMBL:ACUP02004648	EnsemblPlantsGene:GLYMA_07G189500	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0022857	GO:GO:0022891	GO:GO:0055085	InterPro:IPR020846	EnsemblPlants:KRH49937	ProteinID:KRH49937
ProteinID:KRH49937.1	InterPro:MFS_dom	InterPro:MFS_sugar_transport-like	InterPro:MFS_trans_sf	PFAM:PF00083	PRINTS:PR00171
ScanProsite:PS00216	ScanProsite:PS00217	PFscan:PS50850	PANTHER:PTHR23500	PANTHER:PTHR23500:SF357	SUPFAM:SSF103473
InterPro:Sugar/inositol_transpt	InterPro:Sugar_transporter_CS	TIGRFAMs:TIGR00879	TMHMM:TMhelix	UniParc:UPI00018C6A07	SEG:seg

Description

hypothetical protein

Coordinates

chr7:-:35711216..35715019

Molecular Weight (calculated)

56953.3 Da

IEP (calculated)

8.704

GRAVY (calculated)

0.544

Length

518 amino acids

Sequence
(BLAST)

001: MPAVGGINTG GGKEYPGSLT LFVTVTCIVA AMGGLIFGYD IGISGGVTSM DPFLLKFFPS VFRKKNSDKT VNQYCQYDSQ TLTMFTSSLY LAALLSSLVA
101: ATVTRKFGRK LSMLFGGLLF LVGALINGFA QHVWMLIVGR ILLGFGIGFA NQSVPLYLSE MAPYKYRGAL NIGFQLSITV GILVANVLNY FFAKIKGGWG
201: WRLSLGGAMV PALIITVGSL VLPDTPNSMI ERGDREKAKA QLQRIRGIDN VDEEFNDLVA ASESSSQVEH PWRNLLQRKY RPHLTMAVLI PFFQQLTGIN
301: VIMFYAPVLF SSIGFKDDAA LMSAVITGVV NVVATCVSIY GVDKWGRRAL FLEGGVQMLI CQAVVAAAIG AKFGTDGNPG DLPKWYAIVV VLFICIYVSA
401: FAWSWGPLGW LVPSEIFPLE IRSAAQSINV SVNMLFTFLI AQVFLTMLCH MKFGLFLFFA FFVLIMTFFV YFFLPETKGI PIEEMGQVWQ AHPFWSRFVE
501: HDDYGNGVEM GKGAIKEV

Best Arabidopsis Sequence Match ( AT1G11260.1 )
(BLAST)

001: MPAGGFVVGD GQKAYPGKLT PFVLFTCVVA AMGGLIFGYD IGISGGVTSM PSFLKRFFPS VYRKQQEDAS TNQYCQYDSP TLTMFTSSLY LAALISSLVA
101: STVTRKFGRR LSMLFGGILF CAGALINGFA KHVWMLIVGR ILLGFGIGFA NQAVPLYLSE MAPYKYRGAL NIGFQLSITI GILVAEVLNY FFAKIKGGWG
201: WRLSLGGAVV PALIITIGSL VLPDTPNSMI ERGQHEEAKT KLRRIRGVDD VSQEFDDLVA ASKESQSIEH PWRNLLRRKY RPHLTMAVMI PFFQQLTGIN
301: VIMFYAPVLF NTIGFTTDAS LMSAVVTGSV NVAATLVSIY GVDRWGRRFL FLEGGTQMLI CQAVVAACIG AKFGVDGTPG ELPKWYAIVV VTFICIYVAG
401: FAWSWGPLGW LVPSEIFPLE IRSAAQSITV SVNMIFTFII AQIFLTMLCH LKFGLFLVFA FFVVVMSIFV YIFLPETKGI PIEEMGQVWR SHWYWSRFVE
501: DGEYGNALEM GKNSNQAGTK HV

Arabidopsis Description

STP1STP1 [Source:UniProtKB/TrEMBL;Acc:A0A178WJ63]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.