CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 1
golgi 2
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22653
KRH26664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77210.1	KRH22653	AT5G22290.1	21798944
AT1G77210.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41519	Soybean	plasma membrane	95.5	95.5
Solyc05g018230.2.1	Tomato	plasma membrane	61.06	76.1
KRH76334	Soybean	plasma membrane	74.56	74.71
KRH39352	Soybean	plasma membrane	73.97	73.83
PGSC0003DMT400070558	Potato	plasma membrane	73.39	72.67
VIT_11s0016g03400.t01	Wine grape	plasma membrane	70.25	70.12
PGSC0003DMT400000990	Potato	plasma membrane	62.82	69.48
AT1G77210.1	Thale cress	plasma membrane	68.1	69.05
Solyc12g008320.1.1	Tomato	plasma membrane	68.69	68.16
CDX87534	Canola	plasma membrane	63.01	66.94
CDX88350	Canola	plasma membrane	65.36	65.36
OQU89290	Sorghum	golgi, peroxisome, plasma membrane	48.34	65.17
Zm00001d005594_P001	Maize	plasma membrane	65.56	64.67
GSMUA_Achr6P22680_001	Banana	plasma membrane	65.36	64.11
Zm00001d020071_P001	Maize	plasma membrane	64.77	63.41
TraesCS5B01G180800.1	Wheat	plasma membrane	64.97	62.88
TraesCS5D01G187100.1	Wheat	plasma membrane	64.97	62.76
TraesCS5A01G182600.1	Wheat	plasma membrane	64.58	62.38
HORVU5Hr1G055850.2	Barley	plasma membrane	64.58	62.26
KRH12902	Soybean	plasma membrane	54.99	55.64
KRH37895	Soybean	cytosol, peroxisome, plasma membrane	37.77	54.21
KRH40901	Soybean	plasma membrane	54.01	53.91
KRH40905	Soybean	plasma membrane	53.82	53.71
KRH36130	Soybean	plasma membrane	52.45	52.45
KRH35542	Soybean	plasma membrane	48.14	51.79
KRG90624	Soybean	plasma membrane	51.47	51.47
KRH27830	Soybean	plasma membrane	51.08	50.98
KRH49937	Soybean	endoplasmic reticulum	51.47	50.77
KRG91268	Soybean	plasma membrane	50.49	50.39
KRH77866	Soybean	peroxisome, plasma membrane, vacuole	51.47	50.38
KRH41938	Soybean	mitochondrion, nucleus	50.88	50.1
KRH27626	Soybean	peroxisome, plasma membrane, vacuole	50.88	49.81
KRH35541	Soybean	peroxisome, plasma membrane, vacuole	48.73	49.8
KRH07765	Soybean	plasma membrane	49.51	49.41
KRH56314	Soybean	plasma membrane	48.34	49.3
KRH71016	Soybean	plasma membrane	48.53	48.92
KRH56317	Soybean	plasma membrane	47.36	47.45
KRH62357	Soybean	plasma membrane	46.18	46.55
KRH62355	Soybean	plasma membrane	46.18	46.46
KRH75177	Soybean	plasma membrane	48.73	46.46
KRH53073	Soybean	plasma membrane	45.99	46.17
KRH62356	Soybean	plasma membrane	45.01	45.19
KRH16714	Soybean	plasma membrane	43.05	43.39
KRH18902	Soybean	plasma membrane	42.07	42.83
KRH16713	Soybean	plasma membrane	42.07	42.32
GSMUA_Achr8P27410_001	Banana	golgi, peroxisome, plasma membrane	52.25	38.42

Protein Annotations

Gene3D:1.20.1250.20	EntrezGene:100781006	MapMan:24.2.2.1.6	EMBL:ACUP02003356	ncoils:Coil	EnsemblPlantsGene:GLYMA_05G228400
GO:GO:0003674	GO:GO:0005215	GO:GO:0005351	GO:GO:0005355	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015992	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0035428
GO:GO:0046323	GO:GO:0055085	GO:GO:1902600	GO:GO:1904659	UniProt:I1K5X7	InterPro:IPR020846
EnsemblPlants:KRH60234	ProteinID:KRH60234	ProteinID:KRH60234.1	InterPro:MFS_dom	InterPro:MFS_sugar_transport-like	InterPro:MFS_trans_sf
PFAM:PF00083	PRINTS:PR00171	ScanProsite:PS00216	PFscan:PS50850	PANTHER:PTHR23500	PANTHER:PTHR23500:SF14
SUPFAM:SSF103473	InterPro:Sugar/inositol_transpt	InterPro:Sugar_transporter_CS	TIGRFAMs:TIGR00879	TMHMM:TMhelix	UniParc:UPI00023393EB
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:40638693..40643358

Molecular Weight (calculated)

56198.3 Da

IEP (calculated)

8.864

GRAVY (calculated)

0.482

Length

511 amino acids

Sequence
(BLAST)

001: MAGGGVESGV PGKRAHLYEH KFNGYFLYTC LVGALGGSLF GYDLGVSGGV TSMDDFLKEF FPNVYRRKQM HLHETDYCKY DDQVLTLFTS SLYFSALVMT
101: FFASFLTRKK GRKASIIVGA LSFLAGAILN AAAKNIAMLI IGRVLLGGGI GFGNQAVPLY LSEMAPAKNR GAVNQLFQFT TCAGILIANL VNYATAKLHP
201: YGWRISLGLA GFPAFAMLVG GILCAETPNS LVEQGRLDKA KEVLQRIRGT ENVEAEFEDL KEASEEAQAV KSPFRTLLKR KYRPQLIIGA LGIPAFQQLT
301: GNNSILFYAP VIFQSLGFGA NASLFSSFIT NGALLVATVI SMFLVDKFGR RKFFLEAGFE MICCMIITGA VLAVDFGHGK ELGRGVSAIL VVVIFLFVLA
401: YGRSWGPLGW LVPSELFPLE IRSAAQSIVV CVNMIFTALV AQLFLMSLCH LKFGIFLLFA GLIFFMSCFI FFLLPETKKV PIEEIYLLFE NHWFWRRFVT
501: DQDPETSKGT A

Best Arabidopsis Sequence Match ( AT1G77210.1 )
(BLAST)

001: MAGGALTDEG GLKRAHLYEH RITSYFIFAC IVGSMGGSLF GYDLGVSGGV TSMDDFLKEF FPGIYKRKQM HLNETDYCKY DNQILTLFTS SLYFAGLIST
101: FGASYVTRIY GRRGSILVGS VSFFLGGVIN AAAKNILMLI LGRIFLGIGI GFGNQAVPLY LSEMAPAKIR GTVNQLFQLT TCIGILVANL INYKTEQIHP
201: WGWRLSLGLA TVPAILMFLG GLVLPETPNS LVEQGKLEKA KAVLIKVRGT NNIEAEFQDL VEASDAARAV KNPFRNLLAR RNRPQLVIGA IGLPAFQQLT
301: GMNSILFYAP VMFQSLGFGG SASLISSTIT NAALVVAAIM SMYSADKFGR RFLLLEASVE MFCYMVVVGV TLALKFGEGK ELPKSLGLIL VVLICLFVLA
401: YGRSWGPMGW LVPSELFPLE TRSAGQSVVV CVNLFFTALI AQCFLVSLCH LKYGIFLLFA GLILGMGSFV YFLLPETKQV PIEEVYLLWR QHWLWKKYVE
501: DVDE

Arabidopsis Description

STP14Sugar transport protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW61]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.