CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 8
cytosol 2

Predictors

GFP

MS/MS

Papers

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39292	Soybean	plastid	94.63	95.63
GSMUA_Achr5P06880_001	Banana	plastid	49.33	79.95
VIT_11s0016g03880.t01	Wine grape	plastid	72.88	75.23
GSMUA_Achr10P...	Banana	plastid	54.69	74.9
GSMUA_Achr8P19800_001	Banana	cytosol	44.86	73.06
GSMUA_Achr7P14360_001	Banana	plastid	57.68	71.4
HORVU1Hr1G030140.2	Barley	plastid	64.53	71.1
TraesCS1D01G126300.1	Wheat	plastid	67.96	69.83
PGSC0003DMT400001024	Potato	plastid	72.13	69.44
TraesCS1A01G127900.1	Wheat	plastid	67.81	69.15
Solyc12g007110.1.1	Tomato	nucleus	70.49	69.05
EES19240	Sorghum	cytosol, plasma membrane, plastid	59.46	68.56
TraesCS1B01G147000.2	Wheat	plastid	62.89	68.4
Os05t0218400-01	Rice	plasma membrane	67.96	67.56
Zm00001d010421_P002	Maize	plasma membrane	66.77	65.98
Os01t0227200-01	Rice	plasma membrane	57.38	64.49
HORVU3Hr1G030900.1	Barley	plastid	59.91	63.91
OQU86081	Sorghum	plastid	59.02	63.87
TraesCS3B01G179300.1	Wheat	plastid	59.91	63.71
TraesCS3D01G160000.1	Wheat	plastid	59.76	63.45
TraesCS3A01G152200.1	Wheat	plastid	59.46	63.33
Zm00001d039311_P001	Maize	mitochondrion	58.12	62.9
GSMUA_Achr10P...	Banana	cytosol	54.84	61.33
Zm00001d037811_P001	Maize	plasma membrane	43.67	59.19
KRH76796	Soybean	nucleus, plastid	53.95	57.1
KRH60853	Soybean	cytosol, plastid	54.4	56.59
KRH47030	Soybean	nucleus, plastid	47.99	56.49
KRH28656	Soybean	nucleus, plastid	52.76	56.01
KRH08293	Soybean	nucleus	46.2	51.75
KRH69932	Soybean	plastid	46.35	51.15
KRH07595	Soybean	plastid	39.05	49.25
KRH62013	Soybean	plastid	38.9	47.28
KRH52669	Soybean	plastid	46.94	46.81
KRH47029	Soybean	plastid	37.41	45.47
KRG99346	Soybean	plastid	40.98	44.21
KRH69571	Soybean	nucleus, plastid	42.47	41.91
KRH74591	Soybean	nucleus, plastid	42.03	41.11
KRH45666	Soybean	cytosol, nucleus, plastid	42.92	40.11
KRH01485	Soybean	plastid	44.71	39.68
KRH45181	Soybean	plastid	42.77	39.64
KRH75567	Soybean	plastid	42.03	39.61
KRH71097	Soybean	plastid	43.22	39.19
KRH56245	Soybean	cytosol	19.37	36.62
KRH09998	Soybean	cytosol	28.46	27.29
KRH23335	Soybean	cytosol	27.12	26.53
KRH44172	Soybean	cytosol	29.51	26.4
KRH47146	Soybean	cytosol	29.21	26.13
KRH41431	Soybean	cytosol, nucleus, plasma membrane	25.93	25.85
KRH56244	Soybean	cytosol	22.8	25.12
KRH60141	Soybean	cytosol	25.63	24.57
KRH18072	Soybean	cytosol	20.86	23.29
KRH20591	Soybean	cytosol	23.25	23.21
KRH62713	Soybean	cytosol	24.14	23.21
KRH53345	Soybean	cytosol	20.86	22.88
KRH05755	Soybean	cytosol	24.14	22.75
KRH15276	Soybean	cytosol	24.14	21.86
KRH64578	Soybean	cytosol	17.44	20.71

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100781944	MapMan:18.4.1.22	Gene3D:3.30.200.20	EMBL:ACUP02004225	EnsemblPlantsGene:GLYMA_07G085600
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0004675
GO:GO:0004871	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0007166	GO:GO:0007178
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	GO:GO:0038023	UniProt:I1KIQ3	InterPro:IPR000719
EnsemblPlants:KRH48383	ProteinID:KRH48383	ProteinID:KRH48383.1	InterPro:Kinase-like_dom_sf	PFAM:PF07714	PRINTS:PR01217
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF89	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	TMHMM:TMhelix
UniParc:UPI000233836F	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:7891876..7896291

Molecular Weight (calculated)

70875.1 Da

IEP (calculated)

8.338

GRAVY (calculated)

-0.572

Length

671 amino acids

Sequence
(BLAST)

001: MSTAPAPSSP PPTNGTAPPP STPSAPPPAT PSAPPPSTPS SPPPATPSSP PPATPSSPPP ATPSSPPPST PSSPPPATPS ASPPSTPSAS PPPSTPTTPS
101: TSPPSTSPPS PPSHSPPSPP SGGGGGSTPS PPSRSSPSPP SGSRPTTPSS SSSSISTGVV VGIAVGAVAV LLVLSILCIC CRKKKRRRDE EYYAPPPQPP
201: RGPKDDAYGG PPRQWQHNVP PPQDHVVSMM PPKPSPPPAP PAYAAQPPPP PPPFIISSGG SGSNYSGGEF LPPPSPGIAL GFSKSTFTYE ELARATDGFS
301: DANLLGQGGF GYVHRGILPN GKEVAVKQLK AGSGQGEREF QAEVEIISRV HHKHLVSLVG YCITGSQRLL VYEFVPNNTL EFHLHGRGRP TMDWPTRLRI
401: ALGSAKGLAY LHEDCHPKII HRDIKAANIL LDFKFEAKVA DFGLAKFSSD VNTHVSTRVM GTFGYLAPEY ASSGKLTDKS DVFSYGVMLL ELITGRRPVD
501: KNQTFMEDSL VDWARPLLTR ALEEDDFDSI IDPRLQNDYD PNEMARMVAS AAACIRHSAK RRPRMSQVVR ALEGDVSLAD LNEGIRPGHS TMYSSHESSD
601: YDTAQYKEDM KKFRKMALGT QEYGASSEYS AATSEYGLNP SGSSSEAQSR QTTREMEMRK MKNSQGFSGS S

Best Arabidopsis Sequence Match ( AT3G24550.1 )
(BLAST)

001: MSTAPSPGTT PSPSPPSPPT NSTTTTPPPA ASSPPPTTTP SSPPPSPSTN STSPPPSSPL PPSLPPPSPP GSLTPPLPQP SPSAPITPSP PSPTTPSNPR
101: SPPSPNQGPP NTPSGSTPRT PSNTKPSPPS DSSDGLSTGV VVGIAIGGVA ILVILTLICL LCKKKRRRRH DDEAAYYVPP PPPSGPKAGG PYGGQQQYWQ
201: QQNASRPSDN HVVTSLPPPK PPSPPRKPPP PPPPPAFMSS SGGSDYSDLP VLPPPSPGLV LGFSKSTFTY EELSRATNGF SEANLLGQGG FGYVHKGILP
301: SGKEVAVKQL KAGSGQGERE FQAEVEIISR VHHRHLVSLI GYCMAGVQRL LVYEFVPNNN LEFHLHGKGR PTMEWSTRLK IALGSAKGLS YLHEDCNPKI
401: IHRDIKASNI LIDFKFEAKV ADFGLAKIAS DTNTHVSTRV MGTFGYLAPE YAASGKLTEK SDVFSFGVVL LELITGRRPV DANNVYVDDS LVDWARPLLN
501: RASEEGDFEG LADSKMGNEY DREEMARMVA CAAACVRHSA RRRPRMSQIV RALEGNVSLS DLNEGMRPGH SNVYSSYGGS TDYDTSQYND DMIKFRKMAL
601: GTQEYGTTGE YSNPTSDYGL YPSGSSSEGQ ATREMEMGKI KKTGQGYSGP SL

Arabidopsis Description

PERK1Proline-rich receptor-like protein kinase PERK1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV48]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.