CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98502
KRG98507
KRH46360
KRH46364

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38560.1	KRG98502	AT4G26630.1	25387881
AT5G38560.1	KRG98507	AT4G26630.1	25387881
AT5G38560.1	KRH46360	AT4G26630.1	25387881
AT5G38560.1	KRH46364	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45181	Soybean	plastid	89.81	93.78
VIT_14s0083g00330.t01	Wine grape	plasma membrane	47.09	81.65
Solyc02g089750.2.1	Tomato	cytosol	18.65	80.57
Os05t0100700-02	Rice	plasma membrane	25.79	74.14
GSMUA_Achr8P29720_001	Banana	mitochondrion	36.64	69.42
TraesCS1B01G001500.1	Wheat	plastid	32.14	67.69
TraesCS3D01G005400.1	Wheat	cytosol	35.32	66.58
AT5G38560.1	Thale cress	plastid	55.56	61.67
PGSC0003DMT400026193	Potato	plastid	55.42	61.44
CDY01653	Canola	plastid	52.65	60.58
Bra028192.1-P	Field mustard	plastid	53.44	60.39
KRH07595	Soybean	plastid	42.46	60.34
CDX74517	Canola	plastid	52.38	59.64
GSMUA_Achr1P25240_001	Banana	mitochondrion	37.3	58.87
GSMUA_Achr2P09600_001	Banana	plastid	49.07	56.47
Zm00001d035774_P001	Maize	plastid	44.18	56.13
GSMUA_Achr2P14510_001	Banana	plastid	48.41	55.71
GSMUA_Achr4P24400_001	Banana	plastid	48.55	55.52
KRH75567	Soybean	plastid	51.85	55.06
KRH71097	Soybean	plastid	53.31	54.46
KXG20993	Sorghum	plastid	43.65	54.46
Zm00001d040127_P001	Maize	plasma membrane	49.6	54.27
KXG32101	Sorghum	plastid	50.13	54.22
HORVU3Hr1G000770.2	Barley	plastid	49.07	54.16
TraesCS3A01G003900.1	Wheat	plastid	48.81	53.71
GSMUA_Achr10P...	Banana	plastid	50.93	53.7
TraesCS3B01G008600.2	Wheat	plastid	48.68	53.64
Os01t0110500-01	Rice	plasma membrane	49.21	53.3
Zm00001d008433_P007	Maize	plastid	50.0	51.78
Os01t0738300-01	Rice	cytosol	45.5	51.27
TraesCS3A01G278100.1	Wheat	plastid	45.77	51.26
EES01447	Sorghum	plastid	45.77	51.26
HORVU3Hr1G070200.1	Barley	plastid	45.77	51.26
TraesCS3B01G312300.1	Wheat	plastid	45.9	51.26
Zm00001d012774_P001	Maize	cytosol, plastid	45.24	51.2
TraesCS1D01G004300.1	Wheat	plastid	44.31	51.07
TraesCS3D01G278400.1	Wheat	cytosol, plastid	45.37	50.74
Zm00001d043562_P008	Maize	cytosol	45.5	50.22
HORVU1Hr1G000090.3	Barley	plastid	43.12	49.39
KRG99346	Soybean	plastid	39.95	48.55
KRH69571	Soybean	nucleus, plastid	42.59	47.35
KRH74591	Soybean	nucleus, plastid	42.2	46.5
KRH39292	Soybean	plastid	39.42	44.88
KRH48383	Soybean	mitochondrion	39.68	44.71
KRH47030	Soybean	nucleus, plastid	33.33	44.21
KRH62013	Soybean	plastid	32.14	44.02
KRH45666	Soybean	cytosol, nucleus, plastid	41.53	43.73
KRH60853	Soybean	cytosol, plastid	37.17	43.57
KRH08293	Soybean	nucleus	33.2	41.9
KRH52669	Soybean	plastid	36.9	41.46
KRH28656	Soybean	nucleus, plastid	34.66	41.46
KRH76796	Soybean	nucleus, plastid	34.52	41.17
KRH69932	Soybean	plastid	32.94	40.95
KRH47029	Soybean	plastid	29.37	40.22
KRH56245	Soybean	cytosol	18.39	39.15
GSMUA_Achr8P13750_001	Banana	cytosol, nucleus, plastid	42.46	36.6
KRH09998	Soybean	cytosol	25.66	27.71
KRH23335	Soybean	cytosol	24.47	26.97
KRH47146	Soybean	cytosol	26.19	26.4
KRH44172	Soybean	cytosol	26.06	26.27
KRH41431	Soybean	cytosol, nucleus, plasma membrane	23.28	26.15
KRH60141	Soybean	cytosol	23.41	25.29
KRH56244	Soybean	cytosol	19.97	24.79
KRH20591	Soybean	cytosol	21.83	24.55
KRH18072	Soybean	cytosol	19.18	24.13
KRH53345	Soybean	cytosol	19.44	24.02
KRH62713	Soybean	cytosol	21.03	22.78
KRH64578	Soybean	cytosol	16.01	21.42
KRH15276	Soybean	cytosol	20.77	21.19
KRH05755	Soybean	cytosol	19.71	20.93

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100784873	MapMan:18.4.1.22	Gene3D:3.30.200.20	UniProt:A0A0R4J5U2	EMBL:ACUP02011516
EnsemblPlantsGene:GLYMA_18G280200	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004675
GO:GO:0004871	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0007166	GO:GO:0007178
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	GO:GO:0038023	InterPro:IPR000719	EnsemblPlants:KRH01485	ProteinID:KRH01485
ProteinID:KRH01485.1	InterPro:Kinase-like_dom_sf	PFAM:PF07714	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR27001	PANTHER:PTHR27001:SF132	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112
InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	TMHMM:TMhelix	UniParc:UPI000189D225	SEG:seg	:

Description

hypothetical protein

Coordinates

chr18:+:56100685..56107771

Molecular Weight (calculated)

79669.2 Da

IEP (calculated)

7.139

GRAVY (calculated)

-0.521

Length

756 amino acids

Sequence
(BLAST)

001: MASANPSPNA SPVAVPPALG AILSPPPSSS SPTNTSTPPS PPSSSQPNQT QTQTQTPNSP APSSPSDPSA PPPSPPQAVP LTPPPSISLS PPPSSTPPPT
101: LPPPSPPDSP PPLPPASPTP PVTTSPPSPP VTTSPPSPPA TTSPPPAETP PSLPNLSPPS PPAGSPPPQS PPTTIPPPSR PISPSPPPPA NFPRPPTTRT
201: PPEKENPPKT TPSHASPPSV SETPPKPPSS DVPPPSTLPS TPPSDPSGSS PPASLPDPPT NKTVVGGPKV SLPSLPTEKP TARPTNDGTN SMSSNNTPSH
301: SGGLSTGGSV AIGIVVGFIV LSLLVMAVWF AQKKKKKGTG SRGSYAAPSP FTSSHNSGTL FLRPQSPANF LGSGSGSDFV YSPSEPGGVS SSRSWFTYEE
401: LIQATNGFSA QNLLGEGGFG CVYKGLLIDG REVAVKQLKI GGGQGEREFR AEVEIISRVH HRHLVSLVGY CISEHQRLLV YDYVPNDTLH YHLHGENRPV
501: LDWPTRVKVA AGAARGIAYL HEDCHPRIIH RDIKSSNILL DLNYEAQVSD FGLAKLALDS NTHVTTRVMG TFGYMAPEYA TSGKLTEKSD VYSFGVVLLE
601: LITGRKPVDA SQPIGDESLV EWARPLLTEA LDNEDFEILV DPRLGKNYDR NEMFRMIEAA AACVRHSSVK RPRMSQVVRA LDSLDEFTDL NNGMKPGQSS
701: VFDSAQQSAQ IRMFRRMAFG SQDSSGFFNE SQSSWRSRDH DPTTVFSQNK TGHGNV

Best Arabidopsis Sequence Match ( AT5G38560.1 )
(BLAST)

001: MSLVPPLPIL SPPSSNSSTT APPPLQTQPT TPSAPPPVTP PPSPPQSPPP VVSSSPPPPV VSSPPPSSSP PPSPPVITSP PPTVASSPPP PVVIASPPPS
101: TPATTPPAPP QTVSPPPPPD ASPSPPAPTT TNPPPKPSPS PPGETPSPPG ETPSPPKPSP STPTPTTTTS PPPPPATSAS PPSSNPTDPS TLAPPPTPLP
201: VVPREKPIAK PTGPASNNGN NTLPSSSPGK SEVGTGGIVA IGVIVGLVFL SLFVMGVWFT RKRKRKDPGT FVGYTMPPSA YSSPQGSDVV LFNSRSSAPP
301: KMRSHSGSDY MYASSDSGMV SNQRSWFSYD ELSQVTSGFS EKNLLGEGGF GCVYKGVLSD GREVAVKQLK IGGSQGEREF KAEVEIISRV HHRHLVTLVG
401: YCISEQHRLL VYDYVPNNTL HYHLHAPGRP VMTWETRVRV AAGAARGIAY LHEDCHPRII HRDIKSSNIL LDNSFEALVA DFGLAKIAQE LDLNTHVSTR
501: VMGTFGYMAP EYATSGKLSE KADVYSYGVI LLELITGRKP VDTSQPLGDE SLVEWARPLL GQAIENEEFD ELVDPRLGKN FIPGEMFRMV EAAAACVRHS
601: AAKRPKMSQV VRALDTLEEA TDITNGMRPG QSQVFDSRQQ SAQIRMFQRM AFGSQDYSSD FFDRSQSHSS WGSRDQSRFV P

Arabidopsis Description

PERK8Proline-rich receptor-like protein kinase PERK8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFW5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.