Factsheet for GSMUA_Achr1P25240_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plasma membrane 2
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr9P09250_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38560.1	GSMUA_Achr9P09250_001	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P29720_001	Banana	mitochondrion	67.01	80.45
Solyc02g089750.2.1	Tomato	cytosol	27.77	76.0
VIT_14s0083g00330.t01	Wine grape	plasma membrane	56.99	62.61
Bra004022.1-P	Field mustard	plastid	50.1	61.7
GSMUA_Achr8P19800_001	Banana	cytosol	45.51	52.91
GSMUA_Achr5P06880_001	Banana	plastid	44.26	51.21
GSMUA_Achr7P26790_001	Banana	plastid	44.05	48.39
KRH07595	Soybean	plastid	53.44	48.12
GSMUA_Achr10P...	Banana	plastid	44.26	43.27
GSMUA_Achr2P09600_001	Banana	plastid	56.78	41.4
GSMUA_Achr2P14510_001	Banana	plastid	56.78	41.4
CDY59350	Canola	plastid	55.11	39.82
GSMUA_Achr7P14360_001	Banana	plastid	44.89	39.67
HORVU3Hr1G070200.1	Barley	plastid	55.53	39.41
KRH45181	Soybean	plastid	59.5	39.36
CDY01653	Canola	plastid	53.86	39.27
TraesCS3A01G278100.1	Wheat	plastid	55.32	39.26
Zm00001d012774_P001	Maize	cytosol, plastid	54.7	39.22
TraesCS3D01G278400.1	Wheat	cytosol, plastid	55.32	39.2
VIT_01s0011g02460.t01	Wine grape	plastid	59.29	39.12
EES01447	Sorghum	plastid	55.11	39.11
Os01t0738300-01	Rice	cytosol	54.7	39.05
PGSC0003DMT400026193	Potato	plastid	55.53	39.0
TraesCS3B01G312300.1	Wheat	plastid	55.11	39.0
CDX74517	Canola	plastid	53.86	38.86
GSMUA_Achr4P24400_001	Banana	plastid	53.44	38.73
Bra028192.1-P	Field mustard	plastid	54.07	38.71
AT5G38560.1	Thale cress	plastid	54.49	38.33
Zm00001d043562_P008	Maize	cytosol	54.28	37.96
KRH01485	Soybean	plastid	58.87	37.3
GSMUA_Achr5P02090_001	Banana	nucleus	45.72	37.24
KRH75567	Soybean	plastid	55.32	37.22
CDY07370	Canola	plastid	51.57	37.09
GSMUA_Achr7P14330_001	Banana	plasma membrane	33.82	37.07
GSMUA_Achr7P14350_001	Banana	plasma membrane	35.07	37.0
GSMUA_Achr6P27340_001	Banana	cytosol, endoplasmic reticulum, plastid	40.29	36.97
GSMUA_Achr10P...	Banana	plastid	55.32	36.96
CDY04245	Canola	plastid	51.57	36.38
GSMUA_Achr10P...	Banana	cytosol	45.09	36.0
KRH71097	Soybean	plastid	55.11	35.68
PGSC0003DMT400019290	Potato	mitochondrion	51.57	35.49
GSMUA_Achr4P10790_001	Banana	plastid	47.18	35.48
PGSC0003DMT400064597	Potato	plastid	54.91	35.3
AT1G68690.2	Thale cress	plastid	51.98	35.17
GSMUA_Achr10P...	Banana	plastid	40.29	35.09
GSMUA_Achr7P00830_001	Banana	plastid	44.68	34.85
Solyc01g010030.2.1	Tomato	plastid	53.03	34.79
GSMUA_Achr4P32080_001	Banana	plastid	44.68	34.74
Solyc05g010140.2.1	Tomato	plastid	54.28	34.67
PGSC0003DMT400041343	Potato	plastid	53.03	34.37
AT1G26150.1	Thale cress	plastid	53.44	33.6
CDX95997	Canola	plastid	50.1	32.7
GSMUA_Achr4P03200_001	Banana	mitochondrion, plasma membrane	46.14	32.55
GSMUA_Achr1P13940_001	Banana	plastid	47.6	32.29
CDY16146	Canola	plastid	54.91	31.42
GSMUA_Achr8P13750_001	Banana	cytosol, nucleus, plastid	57.2	31.24
Solyc04g006930.2.1	Tomato	plastid	51.57	30.88
Bra024725.1-P	Field mustard	plastid	50.73	29.67
Bra004331.1-P	Field mustard	plastid	51.15	28.29
CDY38610	Canola	plastid	51.15	27.81
GSMUA_Achr3P15710_001	Banana	plastid	41.54	27.26
GSMUA_Achr6P18630_001	Banana	cytosol, nucleus, plasma membrane	26.1	23.28
GSMUA_Achr6P26510_001	Banana	cytosol	34.45	23.04
GSMUA_Achr1P04890_001	Banana	cytosol	33.82	22.85
GSMUA_Achr9P05910_001	Banana	plasma membrane	34.24	22.25
GSMUA_Achr8P04820_001	Banana	cytosol, plasma membrane, plastid	30.69	19.47
GSMUA_Achr5P07770_001	Banana	cytosol	27.56	17.55

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.22	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr1G25240_001
EnsemblPlants:GSMUA_Achr1P25240_001	EnsemblPlants:GSMUA_Achr1T25240_001	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M0S2Y1	PFAM:PF00069
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF489	InterPro:Prot_kinase_dom	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002954840	SEG:seg	:	:

Description

retrotransposon protein, putative, unclassified, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G25240_001]

Coordinates

chr1:-:19641270..19645141

Molecular Weight (calculated)

53536.7 Da

IEP (calculated)

7.925

GRAVY (calculated)

-0.085

Length

479 amino acids

Sequence
(BLAST)

001: MLTFVGAAVW LVKKRKKPVE PPRHGGNLAM ASTVSSHILI RFCLSLLELS RSRSSLNPLV RHGSGVSYGF PYSALEPGLG HAKLWFTLEE LSLITNDFST
101: QNLLGRGGSC CVYKGLLLDG REVAVKQLKV DGAQGEREFK AEVEIISRVH HRHLVSLVGY CISENQRLLV YDYVPNRTLY HHLHGKGRPV MDWTIRLKVA
201: AGAARGIAYL HEDCHPRIIH RDIKSSNILL DYNFEAQVSD FGLAKSAMDT NTHVTTRVMG TFGYLAPEYV RSGKLTAKSD VYSFGVVLLE LVTGRKPVDT
301: SQPLGDESLV EWARPLLIQA LENEDLGDLP DPRLDGNYNK DEMFRMIEVA AACTRHSSDM RPRMGQVARA LDGLSDLDIN NGIQPGHSET FNSSPQSEEI
401: RIFQRMGFAS KDYSGDCNCL CKVFFLAANL LYATLTPMFG VRWFKRFFCF IEPLNSLLVS CPVLHLTFSE MITGYSINL

Best Arabidopsis Sequence Match ( AT5G38560.1 )
(BLAST)

001: MSLVPPLPIL SPPSSNSSTT APPPLQTQPT TPSAPPPVTP PPSPPQSPPP VVSSSPPPPV VSSPPPSSSP PPSPPVITSP PPTVASSPPP PVVIASPPPS
101: TPATTPPAPP QTVSPPPPPD ASPSPPAPTT TNPPPKPSPS PPGETPSPPG ETPSPPKPSP STPTPTTTTS PPPPPATSAS PPSSNPTDPS TLAPPPTPLP
201: VVPREKPIAK PTGPASNNGN NTLPSSSPGK SEVGTGGIVA IGVIVGLVFL SLFVMGVWFT RKRKRKDPGT FVGYTMPPSA YSSPQGSDVV LFNSRSSAPP
301: KMRSHSGSDY MYASSDSGMV SNQRSWFSYD ELSQVTSGFS EKNLLGEGGF GCVYKGVLSD GREVAVKQLK IGGSQGEREF KAEVEIISRV HHRHLVTLVG
401: YCISEQHRLL VYDYVPNNTL HYHLHAPGRP VMTWETRVRV AAGAARGIAY LHEDCHPRII HRDIKSSNIL LDNSFEALVA DFGLAKIAQE LDLNTHVSTR
501: VMGTFGYMAP EYATSGKLSE KADVYSYGVI LLELITGRKP VDTSQPLGDE SLVEWARPLL GQAIENEEFD ELVDPRLGKN FIPGEMFRMV EAAAACVRHS
601: AAKRPKMSQV VRALDTLEEA TDITNGMRPG QSQVFDSRQQ SAQIRMFQRM AFGSQDYSSD FFDRSQSHSS WGSRDQSRFV P

Arabidopsis Description

PERK8Proline-rich receptor-like protein kinase PERK8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFW5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.