Factsheet for GSMUA_Achr4P24400_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr9P09250_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38560.1	GSMUA_Achr9P09250_001	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g089750.2.1	Tomato	cytosol	19.97	75.43
Os05t0100700-02	Rice	plasma membrane	29.65	74.52
VIT_14s0083g00330.t01	Wine grape	plasma membrane	43.72	66.28
GSMUA_Achr2P14510_001	Banana	plastid	64.9	65.3
TraesCS1B01G001500.1	Wheat	plastid	35.25	64.9
GSMUA_Achr8P29720_001	Banana	mitochondrion	38.58	63.91
GSMUA_Achr2P09600_001	Banana	plastid	62.03	62.4
TraesCS3D01G005400.1	Wheat	cytosol	37.22	61.35
Bra004022.1-P	Field mustard	plastid	35.25	59.9
GSMUA_Achr10P...	Banana	plastid	62.18	57.32
KRH07595	Soybean	plastid	43.72	54.32
GSMUA_Achr1P25240_001	Banana	mitochondrion	38.73	53.44
Zm00001d035774_P001	Maize	plastid	47.96	53.28
VIT_01s0011g02460.t01	Wine grape	plastid	57.64	52.48
KXG20993	Sorghum	plastid	47.35	51.65
PGSC0003DMT400026193	Potato	plastid	52.8	51.17
CDY01653	Canola	plastid	50.53	50.84
GSMUA_Achr8P19800_001	Banana	cytosol	31.62	50.73
Bra028192.1-P	Field mustard	plastid	51.29	50.67
CDX74517	Canola	plastid	50.68	50.45
Zm00001d040127_P001	Maize	plasma membrane	52.65	50.36
KXG32101	Sorghum	plastid	53.25	50.36
GSMUA_Achr5P06880_001	Banana	plastid	31.16	49.76
Os01t0110500-01	Rice	plasma membrane	52.19	49.43
AT5G38560.1	Thale cress	plastid	50.83	49.34
TraesCS3A01G003900.1	Wheat	plastid	50.83	48.91
KRH45181	Soybean	plastid	53.56	48.9
TraesCS3B01G008600.2	Wheat	plastid	50.53	48.69
HORVU3Hr1G000770.2	Barley	plastid	50.38	48.61
KRH01485	Soybean	plastid	55.52	48.55
GSMUA_Achr10P...	Banana	plastid	35.85	48.37
TraesCS1D01G004300.1	Wheat	plastid	47.96	48.32
GSMUA_Achr7P26790_001	Banana	plastid	31.77	48.17
Zm00001d008433_P007	Maize	plastid	53.1	48.08
GSMUA_Achr7P14360_001	Banana	plastid	39.33	47.97
CDY07370	Canola	plastid	48.11	47.75
KRH75567	Soybean	plastid	51.29	47.61
CDY04245	Canola	plastid	48.71	47.42
PGSC0003DMT400019290	Potato	mitochondrion	49.92	47.41
HORVU1Hr1G000090.3	Barley	plastid	47.05	47.12
KRH71097	Soybean	plastid	52.5	46.89
PGSC0003DMT400064597	Potato	plastid	52.34	46.44
Solyc01g010030.2.1	Tomato	plastid	50.98	46.16
PGSC0003DMT400041343	Potato	plastid	51.44	46.01
AT1G68690.2	Thale cress	plastid	49.17	45.9
Solyc05g010140.2.1	Tomato	plastid	52.04	45.87
CDY59350	Canola	plastid	45.39	45.25
CDX95997	Canola	plastid	49.47	44.55
GSMUA_Achr10P...	Banana	plastid	35.7	42.91
AT1G26150.1	Thale cress	plastid	49.32	42.78
GSMUA_Achr6P27340_001	Banana	cytosol, endoplasmic reticulum, plastid	33.13	41.95
GSMUA_Achr1P13940_001	Banana	plastid	44.48	41.64
GSMUA_Achr5P02090_001	Banana	nucleus	36.76	41.33
GSMUA_Achr4P10790_001	Banana	plastid	39.03	40.5
Solyc04g006930.2.1	Tomato	plastid	48.87	40.38
CDY16146	Canola	plastid	50.23	39.67
GSMUA_Achr4P03200_001	Banana	mitochondrion, plasma membrane	40.54	39.47
GSMUA_Achr4P32080_001	Banana	plastid	36.31	38.96
GSMUA_Achr7P00830_001	Banana	plastid	36.01	38.76
Bra004331.1-P	Field mustard	plastid	49.92	38.11
GSMUA_Achr7P14330_001	Banana	plasma membrane	25.11	37.99
Bra024725.1-P	Field mustard	plastid	46.9	37.85
CDY38610	Canola	plastid	50.38	37.8
GSMUA_Achr10P...	Banana	cytosol	33.59	37.0
GSMUA_Achr7P14350_001	Banana	plasma membrane	25.26	36.78
GSMUA_Achr3P15710_001	Banana	plastid	39.94	36.16
GSMUA_Achr8P13750_001	Banana	cytosol, nucleus, plastid	44.93	33.87
GSMUA_Achr1P04890_001	Banana	cytosol	27.53	25.67
GSMUA_Achr6P26510_001	Banana	cytosol	27.53	25.42
GSMUA_Achr9P05910_001	Banana	plasma membrane	26.78	24.02
GSMUA_Achr6P18630_001	Banana	cytosol, nucleus, plasma membrane	18.91	23.28
GSMUA_Achr8P04820_001	Banana	cytosol, plasma membrane, plastid	24.21	21.19
GSMUA_Achr5P07770_001	Banana	cytosol	23.3	20.48

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.22	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr4G24400_001	EnsemblPlants:GSMUA_Achr4P24400_001	EnsemblPlants:GSMUA_Achr4T24400_001	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	UniProt:M0SRQ1	PFAM:PF07714	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR27001	PANTHER:PTHR27001:SF132	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112
InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	TMHMM:TMhelix	UniParc:UPI0002954BF3	SEG:seg	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G24400_001]

Coordinates

chr4:-:24218001..24222051

Molecular Weight (calculated)

68898.3 Da

IEP (calculated)

7.435

GRAVY (calculated)

-0.279

Length

661 amino acids

Sequence
(BLAST)

001: MSSSPPPSSS AIPPSSSTST PPPPSPPPVS SAPSPFSPSS PPTSPPSVSP PPSIASSPPP VTTPSPPLPS SSPPPSASPQ PPRVSPPPAS SATSPPASVP
101: STPPTAPTDP PPSSGSPPPA SLAPPSVTPP AGSSPISPSA KPPNSSPSSP PPSASVGPPS VTPSKHASSP AESPPPNFSG GTTPKLPDRP PPLTSSITPP
201: GSIPSPSKRG PNTPSVPGSD AGQGDGGLKT GPAVAIGLVV ALVVLSIAGL AVCFLRKRKN SVAGCNAGFV RPSSFTSSIM SDSPLPMSPS APCVHLHKSG
301: SIETINSPPE TAISSTTPWF LYKELYDITN GFAPQNILGE GGFGSVFKGC LADGREVAVK QLKVGSGQGE HEYKAEVEII SRVHHRHLVS LVGYCISDNQ
401: RLLVYDYVPN GTLESHLHGK RKPVMDWATR VKVAAGAAHG IAYLHEDCHP RIIHRDIKSS NILLGNNFEA QVSDFGLARL AVDACTHVST RVIGTFGYLD
501: PEYASSGRLT EKSDVFSFGV VLLELITGRK PVDSTRPMGD ESLVEWARPL LSRALETGEF GELPDPRLEK NYNEAEMFRM IEAAAACTRH SAAMRPQMGK
601: VVRVLDYLAD IDLSNGVIPG QSKVFHVAHS ADVRIFQQLV FGRHDSSSEY SQYNWCCQTD M

Best Arabidopsis Sequence Match ( AT1G68690.2 )
(BLAST)

001: MATTPVQPPV SNSPPVTSPP PPLNNATSPA TPPPVTSPLP PSAPPPNRAP PPPPPVTTSP PPVANGAPPP PLPKPPESSS PPPQPVIPSP PPSTSPPPQP
101: VIPSPPPSAS PPPALVPPLP SSPPPPASVP PPRPSPSPPI LVRSPPPSVR PIQSPPPPPS DRPTQSPPPP SPPSPPSERP TQSPPSPPSE RPTQSPPPPS
201: PPSPPSDRPS QSPPPPPEDT KPQPPRRSPN SPPPTFSSPP RSPPEILVPG SNNPSQNNPT LRPPLDAPNS TNNSGIGTGA VVGISVAVAL VVFTLFGIFV
301: WCLRKREKRL SAVSGGDVTP SPMSSTARSD SAFFRMQSSA PVGASKRSGS YQSQSGGLGN SKALFSYEEL VKATNGFSQE NLLGEGGFGC VYKGILPDGR
401: VVAVKQLKIG GGQGDREFKA EVETLSRIHH RHLVSIVGHC ISGDRRLLIY DYVSNNDLYF HLHGEKSVLD WATRVKIAAG AARGLAYLHE DCHPRIIHRD
501: IKSSNILLED NFDARVSDFG LARLALDCNT HITTRVIGTF GYMAPEYASS GKLTEKSDVF SFGVVLLELI TGRKPVDTSQ PLGDESLVEW ARPLISHAIE
601: TEEFDSLADP KLGGNYVESE MFRMIEAAGA CVRHLATKRP RMGQIVRAFE SLAAEDLTNG MRLGESEVFN SAQQSAEIRL FRRMAFGSQN YSTDFFSHSS
701: YNSRDANV

Arabidopsis Description

PERK9Proline-rich receptor-like protein kinase PERK9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SX31]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.