CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89318
CDX94304
CDX97358

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38560.1	CDX89318	AT4G26630.1	25387881
AT5G38560.1	CDX94304	AT4G26630.1	25387881
AT5G38560.1	CDX97358	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74517	Canola	plastid	96.8	95.78
Bra028192.1-P	Field mustard	plastid	95.89	94.17
AT5G38560.1	Thale cress	plastid	85.54	82.53
Solyc02g089750.2.1	Tomato	cytosol	20.55	77.14
Os05t0100700-02	Rice	plasma membrane	28.92	72.24
VIT_14s0083g00330.t01	Wine grape	plasma membrane	47.03	70.87
GSMUA_Achr8P29720_001	Banana	mitochondrion	38.05	62.66
TraesCS3D01G005400.1	Wheat	cytosol	37.9	62.09
TraesCS1B01G001500.1	Wheat	plastid	33.49	61.28
PGSC0003DMT400026193	Potato	plastid	57.23	55.13
Zm00001d035774_P001	Maize	plastid	49.16	54.29
GSMUA_Achr1P25240_001	Banana	mitochondrion	39.27	53.86
CDX75275	Canola	cytosol	28.46	53.12
KRH45181	Soybean	plastid	58.3	52.9
KXG20993	Sorghum	plastid	48.71	52.81
KRH01485	Soybean	plastid	60.58	52.65
KXG32101	Sorghum	plastid	55.1	51.79
Zm00001d040127_P001	Maize	plasma membrane	54.19	51.52
GSMUA_Achr2P09600_001	Banana	plastid	51.45	51.45
GSMUA_Achr4P24400_001	Banana	plastid	50.84	50.53
Os01t0110500-01	Rice	plasma membrane	53.58	50.43
CDY07370	Canola	plastid	50.68	50.0
TraesCS3B01G008600.2	Wheat	plastid	51.9	49.71
TraesCS3A01G003900.1	Wheat	plastid	51.75	49.49
CDY04245	Canola	plastid	51.14	49.48
CDY59350	Canola	plastid	49.92	49.47
GSMUA_Achr2P14510_001	Banana	plastid	49.47	49.47
HORVU3Hr1G000770.2	Barley	plastid	50.99	48.91
Zm00001d008433_P007	Maize	plastid	54.03	48.63
GSMUA_Achr10P...	Banana	plastid	52.21	47.84
EES01447	Sorghum	plastid	48.86	47.56
Os01t0738300-01	Rice	cytosol	48.55	47.54
Zm00001d012774_P001	Maize	cytosol, plastid	48.25	47.46
TraesCS3A01G278100.1	Wheat	plastid	48.55	47.26
HORVU3Hr1G070200.1	Barley	plastid	48.55	47.26
TraesCS1D01G004300.1	Wheat	plastid	47.18	47.26
HORVU1Hr1G000090.3	Barley	plastid	47.34	47.12
TraesCS3B01G312300.1	Wheat	plastid	48.55	47.12
TraesCS3D01G278400.1	Wheat	cytosol, plastid	48.25	46.89
Zm00001d043562_P008	Maize	cytosol	48.55	46.57
CDX95997	Canola	plastid	51.45	46.05
CDX92276	Canola	plasma membrane	33.64	46.04
CDY02546	Canola	plastid	35.31	45.22
CDY47531	Canola	plastid	35.16	44.68
CDY03749	Canola	plastid	45.21	44.2
CDY41442	Canola	plastid	44.29	44.16
CDY39543	Canola	plastid	43.07	43.61
CDX77417	Canola	plastid	42.77	43.23
CDX91719	Canola	plastid	44.14	43.03
CDY09439	Canola	plastid	44.14	42.46
CDY16146	Canola	plastid	53.12	41.7
CDX93398	Canola	cytosol	44.44	40.84
CDY11592	Canola	plastid	45.51	40.68
CDY65603	Canola	plastid	38.2	40.61
CDY44156	Canola	nucleus	43.99	40.59
CDY37963	Canola	cytosol	44.44	40.5
CDY46249	Canola	nucleus, plastid	40.79	40.36
CDX76282	Canola	nucleus, plastid	40.49	40.24
CDY20960	Canola	cytosol	44.44	40.11
CDY47133	Canola	cytosol, plastid	45.81	40.03
CDY20615	Canola	cytosol	43.99	39.75
CDY51639	Canola	nucleus	42.01	39.32
CDX75434	Canola	nucleus, plastid	40.18	39.29
CDY59546	Canola	plastid	26.03	39.22
CDY38610	Canola	plastid	52.51	39.16
CDY71995	Canola	nucleus, plastid	25.42	39.02
CDY48706	Canola	cytosol	31.05	38.64
CDY48859	Canola	nucleus, plastid	38.97	37.37
CDY48084	Canola	nucleus, plastid	38.97	37.32
CDX95494	Canola	nucleus, plastid	38.81	37.17
CDY18547	Canola	nucleus, plastid	38.2	36.64
CDX69059	Canola	endoplasmic reticulum, plasma membrane	39.42	36.27
CDX99312	Canola	nucleus, plastid	35.92	36.03
CDY61983	Canola	cytosol, plastid	37.9	35.72
CDX68882	Canola	plastid	38.05	35.56
CDX82325	Canola	cytosol, plastid	38.05	35.06
GSMUA_Achr8P13750_001	Banana	cytosol, nucleus, plastid	43.23	32.38
CDX75728	Canola	cytosol	26.94	29.5
CDY10586	Canola	cytosol, nucleus, plasma membrane	25.72	27.98
CDX82522	Canola	cytosol	27.85	27.85
CDY46900	Canola	plasma membrane	31.2	27.74
CDY02454	Canola	cytosol, nucleus, plasma membrane	25.42	27.65
CDY66134	Canola	nucleus	37.29	26.63
CDY32758	Canola	plasma membrane	26.64	26.32
CDY20711	Canola	cytosol, plasma membrane, plastid	26.18	25.98
CDY51224	Canola	plastid	37.29	25.9
CDY23630	Canola	cytosol	28.77	25.51
CDY55134	Canola	cytosol	29.07	25.4
CDY51732	Canola	cytosol	29.07	25.4
CDX97507	Canola	cytosol, mitochondrion, nucleus	28.77	25.3
CDY32884	Canola	plasma membrane	23.29	24.76
CDY32921	Canola	plasma membrane	23.44	20.53
CDY32757	Canola	plasma membrane	19.79	18.34
CDY48704	Canola	cytosol, mitochondrion, plasma membrane, plastid	8.98	15.21

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.22	Gene3D:3.30.200.20	GO:A0A078EQ78	EnsemblPlants:CDY01653	ProteinID:CDY01653
ProteinID:CDY01653.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488
GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00112714001	InterPro:IPR000719	InterPro:Kinase-like_dom_sf
PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF132
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	TMHMM:TMhelix
UniParc:UPI0004EDEE13	SEG:seg	:	:	:	:

Description

BnaC04g30990D

Coordinates

chrLK031928:-:79799..82725

Molecular Weight (calculated)

69407.8 Da

IEP (calculated)

7.750

GRAVY (calculated)

-0.432

Length

657 amino acids

Sequence
(BLAST)

001: MSLVPPLPIL TPPSSNSSTT SPPPSSSPPT TPSVPPPVTP PPAPPVPPSS PPPSPVISSP PPSSSPPPPV VSSPPPAAAS SPPPPPVVAA SPPPSTPPPA
101: PPQDSSPPPP PESSPSPPAP TTTTSSPPPP SNTPSPPKPS PSPPSDTRSP PPPPSDKPSP PPPASDPTDP AALAPPPTPL PIVPREKPTP PASTNGNGNN
201: TSSSPSPSGG GGGGVGAGGI AAIGVIVGLL LLSLFVLALW FTRKRKRKDH PGAFVGYTMP PSGYSSPQGS DAVLFNTNSS APNNKMRSHS GMVSNQRSWF
301: SYDELAQVTN GFSQKNLLGQ GGFGCVYKGV LADGREIAVK QLKIGGSQGE REFKAEVEII SRVHHRHLVT LVGYCISEQH RLLVYDYVPN NTLHFHLHAP
401: GRPVMTWETR VKVAAGAARG IAYLHEDCHP RIIHRDIKSS NILLDNSFEA LVADFGLAKI AQELDLNTHV STRVMGTFGY MAPEYATSGK LSEKADVYSY
501: GVILLELITG RKPVDTSQPL GDESLVEWAK PLLSQAIENE EFGELVDPRL GGNFIAAEMF RMVEAAAACV RHSAARRPKM SQVVRALDTL EEASDITNGM
601: RPGQSQVYDS RQQSAQIRMF QRMAFGSQDY SSDFFDRSQS HSSWGSRDTR DQSKFVP

Best Arabidopsis Sequence Match ( AT5G38560.1 )
(BLAST)

001: MSLVPPLPIL SPPSSNSSTT APPPLQTQPT TPSAPPPVTP PPSPPQSPPP VVSSSPPPPV VSSPPPSSSP PPSPPVITSP PPTVASSPPP PVVIASPPPS
101: TPATTPPAPP QTVSPPPPPD ASPSPPAPTT TNPPPKPSPS PPGETPSPPG ETPSPPKPSP STPTPTTTTS PPPPPATSAS PPSSNPTDPS TLAPPPTPLP
201: VVPREKPIAK PTGPASNNGN NTLPSSSPGK SEVGTGGIVA IGVIVGLVFL SLFVMGVWFT RKRKRKDPGT FVGYTMPPSA YSSPQGSDVV LFNSRSSAPP
301: KMRSHSGSDY MYASSDSGMV SNQRSWFSYD ELSQVTSGFS EKNLLGEGGF GCVYKGVLSD GREVAVKQLK IGGSQGEREF KAEVEIISRV HHRHLVTLVG
401: YCISEQHRLL VYDYVPNNTL HYHLHAPGRP VMTWETRVRV AAGAARGIAY LHEDCHPRII HRDIKSSNIL LDNSFEALVA DFGLAKIAQE LDLNTHVSTR
501: VMGTFGYMAP EYATSGKLSE KADVYSYGVI LLELITGRKP VDTSQPLGDE SLVEWARPLL GQAIENEEFD ELVDPRLGKN FIPGEMFRMV EAAAACVRHS
601: AAKRPKMSQV VRALDTLEEA TDITNGMRPG QSQVFDSRQQ SAQIRMFQRM AFGSQDYSSD FFDRSQSHSS WGSRDQSRFV P

Arabidopsis Description

PERK8Proline-rich receptor-like protein kinase PERK8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFW5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.