Factsheet for TraesCS3D01G005400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38560.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT5G38560.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT5G38560.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g089750.2.1	Tomato	cytosol	32.92	75.43
Bra004022.1-P	Field mustard	plastid	59.6	61.44
VIT_14s0083g00330.t01	Wine grape	plasma membrane	66.58	61.24
TraesCS3B01G008600.2	Wheat	plastid	96.51	56.41
TraesCS3A01G003900.1	Wheat	plastid	96.51	56.33
HORVU3Hr1G000770.2	Barley	plastid	95.51	55.91
KXG32101	Sorghum	plastid	82.79	47.5
Os01t0110500-01	Rice	plasma membrane	82.54	47.42
Zm00001d040127_P001	Maize	plasma membrane	80.05	46.45
Zm00001d008433_P007	Maize	plastid	82.79	45.48
TraesCS3D01G290100.1	Wheat	cytosol	49.63	45.43
TraesCS1D01G004300.1	Wheat	plastid	73.57	44.97
TraesCS1D01G339600.1	Wheat	plastid	49.88	44.35
KRH07595	Soybean	plastid	58.1	43.8
GSMUA_Achr2P09600_001	Banana	plastid	65.09	39.73
GSMUA_Achr2P14510_001	Banana	plastid	63.84	38.97
Bra028192.1-P	Field mustard	plastid	63.34	37.97
CDY01653	Canola	plastid	62.09	37.9
CDX74517	Canola	plastid	62.34	37.65
PGSC0003DMT400026193	Potato	plastid	63.84	37.54
TraesCS3D01G278400.1	Wheat	cytosol, plastid	63.09	37.43
GSMUA_Achr4P24400_001	Banana	plastid	61.35	37.22
AT5G38560.1	Thale cress	plastid	63.09	37.15
CDY59350	Canola	plastid	61.35	37.1
GSMUA_Achr10P...	Banana	plastid	65.84	36.82
KRH45181	Soybean	plastid	66.33	36.74
CDY07370	Canola	plastid	59.6	35.89
VIT_01s0011g02460.t01	Wine grape	plastid	64.84	35.81
TraesCS3D01G160000.1	Wheat	plastid	55.86	35.44
CDY04245	Canola	plastid	59.85	35.35
KRH01485	Soybean	plastid	66.58	35.32
KRH75567	Soybean	plastid	62.34	35.11
TraesCS1D01G126300.1	Wheat	plastid	56.61	34.76
KRH71097	Soybean	plastid	63.09	34.19
AT1G68690.2	Thale cress	plastid	60.35	34.18
Solyc01g010030.2.1	Tomato	plastid	59.6	32.74
AT1G26150.1	Thale cress	plastid	61.85	32.55
PGSC0003DMT400041343	Potato	plastid	59.85	32.48
PGSC0003DMT400019290	Potato	mitochondrion	56.36	32.47
PGSC0003DMT400064597	Potato	plastid	60.1	32.35
Solyc05g010140.2.1	Tomato	plastid	59.6	31.87
CDX95997	Canola	plastid	56.86	31.06
TraesCS7D01G232700.1	Wheat	nucleus, plastid	56.11	29.96
CDY16146	Canola	plastid	60.6	29.03
Solyc04g006930.2.1	Tomato	plastid	55.11	27.62
Bra004331.1-P	Field mustard	plastid	59.35	27.48
Bra024725.1-P	Field mustard	plastid	56.11	27.47
CDY38610	Canola	plastid	59.1	26.9
TraesCS3D01G217700.1	Wheat	cytosol, nucleus, peroxisome	40.9	21.69
TraesCS1D01G442500.1	Wheat	plastid	40.4	18.26
TraesCS3D01G402800.1	Wheat	mitochondrion	29.43	17.13

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.22	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	PFAM:PF00069	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR27001	PANTHER:PTHR27001:SF489	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:TraesCS3D01G005400	EnsemblPlants:TraesCS3D01G005400.1	TIGR:cd14066	:	:

Description

No Description!

Coordinates

chr3D:+:2141059..2143491

Molecular Weight (calculated)

44371.2 Da

IEP (calculated)

6.195

GRAVY (calculated)

-0.403

Length

401 amino acids

Sequence
(BLAST)

001: SAHYSKPNFC SGHSEKTKTN YSAGSPEFKD TMSEYSMGNC RFFTYEEMHN ITNGFSDQNL LGEGGFGSVY KGCLPEGREV AIKKLKDGSG QGEREFQAEV
101: EIISRVHHRH LVSLVGYCIS GDQRLLVYDF VPNDTLHYHL HGRGVPVLEW PARVKISAGS AKGIAYLHED CHPRIIHRDI KSSNILLDNN FEAQVADFGL
201: ARLAMDFATH VTTRVMGTFG YMAPEYASSG KLTEKSDVFS FGVVLLELIT GRKPVDASNP LGDESLVEWA RPLLTQALET GNVGELLDPR LDKNFNEVEL
301: FHMIEAAAAC IRHSAPRRPR MSQVVRALDS LTDVDLTNGV QPGMSEMFNA PNTAEIRLFQ RMAFGSQDFT TDFTQSSSWN SSRQGGDVDA SGGPRHPQSQ
401: P

Best Arabidopsis Sequence Match ( AT5G38560.1 )
(BLAST)

001: MSLVPPLPIL SPPSSNSSTT APPPLQTQPT TPSAPPPVTP PPSPPQSPPP VVSSSPPPPV VSSPPPSSSP PPSPPVITSP PPTVASSPPP PVVIASPPPS
101: TPATTPPAPP QTVSPPPPPD ASPSPPAPTT TNPPPKPSPS PPGETPSPPG ETPSPPKPSP STPTPTTTTS PPPPPATSAS PPSSNPTDPS TLAPPPTPLP
201: VVPREKPIAK PTGPASNNGN NTLPSSSPGK SEVGTGGIVA IGVIVGLVFL SLFVMGVWFT RKRKRKDPGT FVGYTMPPSA YSSPQGSDVV LFNSRSSAPP
301: KMRSHSGSDY MYASSDSGMV SNQRSWFSYD ELSQVTSGFS EKNLLGEGGF GCVYKGVLSD GREVAVKQLK IGGSQGEREF KAEVEIISRV HHRHLVTLVG
401: YCISEQHRLL VYDYVPNNTL HYHLHAPGRP VMTWETRVRV AAGAARGIAY LHEDCHPRII HRDIKSSNIL LDNSFEALVA DFGLAKIAQE LDLNTHVSTR
501: VMGTFGYMAP EYATSGKLSE KADVYSYGVI LLELITGRKP VDTSQPLGDE SLVEWARPLL GQAIENEEFD ELVDPRLGKN FIPGEMFRMV EAAAACVRHS
601: AAKRPKMSQV VRALDTLEEA TDITNGMRPG QSQVFDSRQQ SAQIRMFQRM AFGSQDYSSD FFDRSQSHSS WGSRDQSRFV P

Arabidopsis Description

PERK8Proline-rich receptor-like protein kinase PERK8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFW5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.