Factsheet for Solyc04g006930.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
plasma membrane 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019290	Potato	mitochondrion	77.5	89.08
Solyc02g089750.2.1	Tomato	cytosol	15.88	72.57
Os05t0100700-02	Rice	plasma membrane	21.12	64.26
Bra004022.1-P	Field mustard	plastid	30.12	61.95
GSMUA_Achr8P29720_001	Banana	mitochondrion	29.25	58.65
KRH07595	Soybean	plastid	38.88	58.46
Solyc05g010140.2.1	Tomato	plastid	53.12	56.67
TraesCS1B01G001500.1	Wheat	plastid	24.88	55.43
TraesCS3D01G005400.1	Wheat	cytosol	27.62	55.11
Solyc01g010030.2.1	Tomato	plastid	49.88	54.66
GSMUA_Achr1P25240_001	Banana	mitochondrion	30.88	51.57
VIT_01s0011g02460.t01	Wine grape	plastid	46.75	51.52
Zm00001d035774_P001	Maize	plastid	36.62	49.24
CDY07370	Canola	plastid	40.88	49.1
GSMUA_Achr4P24400_001	Banana	plastid	40.38	48.87
KRH75567	Soybean	plastid	43.25	48.6
KRH71097	Soybean	plastid	44.88	48.51
CDY04245	Canola	plastid	41.0	48.31
GSMUA_Achr2P09600_001	Banana	plastid	39.62	48.25
GSMUA_Achr2P14510_001	Banana	plastid	39.62	48.25
AT1G68690.2	Thale cress	plastid	42.25	47.74
CDY59350	Canola	plastid	39.38	47.51
GSMUA_Achr10P...	Banana	plastid	42.38	47.28
KXG20993	Sorghum	plastid	35.75	47.19
CDX95997	Canola	plastid	43.12	47.0
KXG32101	Sorghum	plastid	40.62	46.49
Zm00001d040127_P001	Maize	plasma membrane	40.12	46.45
AT1G26150.1	Thale cress	plastid	43.5	45.67
Os01t0110500-01	Rice	plasma membrane	39.5	45.27
TraesCS3A01G003900.1	Wheat	plastid	38.5	44.83
TraesCS3B01G008600.2	Wheat	plastid	38.38	44.75
Os01t0738300-01	Rice	cytosol	37.25	44.41
HORVU3Hr1G000770.2	Barley	plastid	37.88	44.23
HORVU3Hr1G070200.1	Barley	plastid	37.25	44.15
TraesCS3A01G278100.1	Wheat	plastid	37.12	44.0
Zm00001d008433_P007	Maize	plastid	40.12	43.97
Solyc08g068250.2.1	Tomato	cytosol	23.12	43.84
Zm00001d012774_P001	Maize	cytosol, plastid	36.5	43.71
EES01447	Sorghum	plastid	36.88	43.7
TraesCS3B01G312300.1	Wheat	plastid	36.88	43.57
TraesCS3D01G278400.1	Wheat	cytosol, plastid	36.75	43.49
Zm00001d043562_P008	Maize	cytosol	36.5	42.63
TraesCS1D01G004300.1	Wheat	plastid	34.88	42.53
HORVU1Hr1G000090.3	Barley	plastid	34.88	42.27
Solyc02g085430.2.1	Tomato	nucleus, plastid	31.5	41.31
CDY16146	Canola	plastid	42.88	40.98
Bra004331.1-P	Field mustard	plastid	43.62	40.3
Solyc03g120760.2.1	Tomato	plasma membrane, plastid	28.88	39.76
CDY38610	Canola	plastid	43.5	39.5
Solyc12g007110.1.1	Tomato	nucleus	33.38	38.98
Solyc02g062790.2.1	Tomato	nucleus	31.75	38.84
Bra024725.1-P	Field mustard	plastid	39.62	38.71
Solyc10g051330.1.1	Tomato	nucleus	27.25	36.33
Solyc03g034060.2.1	Tomato	cytosol, plastid	33.0	35.48
Solyc11g044460.1.1	Tomato	nucleus	29.75	32.51
GSMUA_Achr8P13750_001	Banana	cytosol, nucleus, plastid	34.88	31.81
Solyc01g109530.2.1	Tomato	nucleus	27.5	31.52
Solyc07g027020.2.1	Tomato	cytosol, mitochondrion, plasma membrane, plastid	20.75	25.62
Solyc03g121440.2.1	Tomato	cytosol	23.0	25.17
Solyc12g044840.1.1	Tomato	cytosol	22.38	24.16
Solyc01g096690.1.1	Tomato	cytosol, nucleus, plasma membrane	18.0	21.79
Solyc04g063370.1.1	Tomato	cytosol	16.0	21.12
Solyc04g079690.2.1	Tomato	plasma membrane	18.62	20.75

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.510.10	MapMan:18.4.1.22	Gene3D:3.30.200.20	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS
InterPro:EF_hand_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674
GO:GO:0004675	GO:GO:0004871	GO:GO:0005488	GO:GO:0005509	GO:GO:0005524	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165
GO:GO:0007166	GO:GO:0007178	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	GO:GO:0038023
InterPro:IPR000719	InterPro:IPR002048	UniProt:K4BNK0	InterPro:Kinase-like_dom_sf	PFAM:PF00069	PFAM:PF13499
ScanProsite:PS00018	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PFscan:PS50222	PANTHER:PTHR27001
PANTHER:PTHR27001:SF489	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00054	SMART:SM00220	SUPFAM:SSF47473
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc04g006930.2	EnsemblPlants:Solyc04g006930.2.1	TMHMM:TMhelix	UniParc:UPI00027665EF
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:618400..625090

Molecular Weight (calculated)

84551.9 Da

IEP (calculated)

6.020

GRAVY (calculated)

-0.464

Length

800 amino acids

Sequence
(BLAST)

001: MDSSLLYEGS APPTDNAPPT SSPPPTPSSP PVSSPPPPSS SPPPSSPPPA SSSPPPSSPP PESTSPPPSS PPPKSSSPPP ASPPPAPTPP PPVSSPPPTS
101: SPPPALSPPP HVQNPEPPPA PQSHGNSSPP QSPEPKKGSS SSSPPSPPSS NSPGDGGRGG DTPPSPTSKS SENSPPSPAL GPSKDSPPSP ATLSPSNSPS
201: SDSPSNSSTP TSVIQWSPPP PSSNGAQSSL SPPSSQVPSN HNSGNRSTES PKPAGGNSSG TAESASIGIV IVLLLVGIIG AVVWCIRKRK KKNSVHCSGY
301: VKPISTCSSP KSADPGGFNN AKTWFTYQEL VEATNDFSAK NELGKGGFGS VYKGYLADGR YVAVKQLNIG GSQGEREFRA EVEIISRIHH RHLVSLVGYC
401: ISENKRLLVY DYVSNNTLYF HLHAQGRPVM NWPTRVKIAV GAARGIAYLH EDCYPRIIHR DIKSSNILLD DNFEAHVADF GLAKLAQDAE SHITTRVVGT
501: FGYMAPEYAS TGKLTEKSDV YSFGVVLLEL ITGRKSVDTS QPSGQENLVE WARPLLSRAL QKEEFDLLAD PCLEKNYVGT EMFRMIEAAA SCVRHSSAKR
601: PAMGQIMRAF DGMAIHDLSN GMKVGESAIH SAALQSAEIS WFRKMLKDIF MRFDLNGDGS LTQLELAALL RSLGLKPGCG DQLHVLLSKI DHNGNGSVEF
701: DELVDAIMPD MNEDILINQD QLMELFQSFD RDGNGYITAA ELAGQMSKMG HPLTYRELSN LMQEADTNGD GVISFNEFAN ILGKSATDFL GLNTVSESVA

Best Arabidopsis Sequence Match ( AT1G26150.1 )
(BLAST)

001: MTTPAQAPRE EVSLSPSLAS PPLMALPPPQ PSFPGDNATS PTREPTNGNP PETTNTPAQS SPPPETPLSS PPPEPSPPSP SLTGPPPTTI PVSPPPEPSP
101: PPPLPTEAPP PANPVSSPPP ESSPPPPPPT EAPPTTPITS PSPPTNPPPP PESPPSLPAP DPPSNPLPPP KLVPPSHSPP RHLPSPPASE IPPPPRHLPS
201: PPASERPSTP PSDSEHPSPP PPGHPKRREQ PPPPGSKRPT PSPPSPSDSK RPVHPSPPSP PEETLPPPKP SPDPLPSNSS SPPTLLPPSS VVSPPSPPRK
301: SVSGPDNPSP NNPTPVTDNS SSSGISIAAV VGVSIGVALV LLTLIGVVVC CLKKRKKRLS TIGGGYVMPT PMESSSPRSD SALLKTQSSA PLVGNRSSNR
401: TYLSQSEPGG FGQSRELFSY EELVIATNGF SDENLLGEGG FGRVYKGVLP DERVVAVKQL KIGGGQGDRE FKAEVDTISR VHHRNLLSMV GYCISENRRL
501: LIYDYVPNNN LYFHLHAAGT PGLDWATRVK IAAGAARGLA YLHEDCHPRI IHRDIKSSNI LLENNFHALV SDFGLAKLAL DCNTHITTRV MGTFGYMAPE
601: YASSGKLTEK SDVFSFGVVL LELITGRKPV DASQPLGDES LVEWARPLLS NATETEEFTA LADPKLGRNY VGVEMFRMIE AAAACIRHSA TKRPRMSQIV
701: RAFDSLAEED LTNGMRLGES EIINSAQQSA EIRLFRRMAF GSQNYSTDSL TRNSYISKDE NL

Arabidopsis Description

PERK10Proline-rich receptor-like protein kinase PERK10 [Source:UniProtKB/Swiss-Prot;Acc:Q9C660]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.