Factsheet for Solyc12g007110.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 7
cytosol 2
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001024	Potato	plastid	96.5	94.83
GSMUA_Achr5P06880_001	Banana	plastid	45.99	76.09
VIT_11s0016g03880.t01	Wine grape	plastid	67.3	70.92
KRH39292	Soybean	plastid	68.61	70.78
KRH48383	Soybean	mitochondrion	69.05	70.49
GSMUA_Achr10P...	Banana	plastid	50.37	70.41
GSMUA_Achr8P19800_001	Banana	cytosol	42.34	70.39
Solyc02g089750.2.1	Tomato	cytosol	17.81	69.71
HORVU1Hr1G030140.2	Barley	plastid	61.31	68.97
TraesCS1D01G126300.1	Wheat	plastid	64.53	67.69
EES19240	Sorghum	cytosol, plasma membrane, plastid	57.37	67.53
TraesCS1A01G127900.1	Wheat	plastid	64.82	67.48
TraesCS1B01G147000.2	Wheat	plastid	60.0	66.61
GSMUA_Achr7P14360_001	Banana	plastid	52.7	66.61
Zm00001d010421_P002	Maize	plasma membrane	64.09	64.65
Os05t0218400-01	Rice	plasma membrane	63.65	64.59
OQU86081	Sorghum	plastid	56.2	62.1
Os01t0227200-01	Rice	plasma membrane	53.43	61.31
HORVU3Hr1G030900.1	Barley	plastid	55.77	60.73
Zm00001d039311_P001	Maize	mitochondrion	54.89	60.65
TraesCS3B01G179300.1	Wheat	plastid	55.77	60.54
TraesCS3D01G160000.1	Wheat	plastid	55.77	60.44
TraesCS3A01G152200.1	Wheat	plastid	55.33	60.16
GSMUA_Achr10P...	Banana	cytosol	51.39	58.67
Zm00001d037811_P001	Maize	plasma membrane	41.46	57.37
Solyc08g068250.2.1	Tomato	cytosol	34.89	56.64
Solyc03g120760.2.1	Tomato	plasma membrane, plastid	45.99	54.22
Solyc02g085430.2.1	Tomato	nucleus, plastid	46.28	51.97
Solyc02g062790.2.1	Tomato	nucleus	48.03	50.31
Solyc10g051330.1.1	Tomato	nucleus	40.15	45.83
Solyc03g034060.2.1	Tomato	cytosol, plastid	49.63	45.7
Solyc01g109530.2.1	Tomato	nucleus	44.23	43.41
Solyc11g044460.1.1	Tomato	nucleus	46.28	43.31
Solyc05g010140.2.1	Tomato	plastid	42.19	38.53
Solyc01g010030.2.1	Tomato	plastid	40.88	38.36
Solyc04g006930.2.1	Tomato	plastid	38.98	33.38
Solyc03g121440.2.1	Tomato	cytosol	28.18	26.4
Solyc07g027020.2.1	Tomato	cytosol, mitochondrion, plasma membrane, plastid	24.53	25.93
Solyc12g044840.1.1	Tomato	cytosol	27.74	25.64
Solyc01g096690.1.1	Tomato	cytosol, nucleus, plasma membrane	21.46	22.24
Solyc04g063370.1.1	Tomato	cytosol	19.56	22.11
Solyc04g079690.2.1	Tomato	plasma membrane	22.92	21.87

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.22	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004674	GO:GO:0004675	GO:GO:0004871	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154
GO:GO:0007165	GO:GO:0007166	GO:GO:0007178	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538
GO:GO:0038023	InterPro:IPR000719	UniProt:K4DBP8	InterPro:Kinase-like_dom_sf	PFAM:PF07714	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF89	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc12g007110.1	EnsemblPlants:Solyc12g007110.1.1
TMHMM:TMhelix	UniParc:UPI000276AAEC	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:+:1549690..1553261

Molecular Weight (calculated)

72297.0 Da

IEP (calculated)

7.944

GRAVY (calculated)

-0.489

Length

685 amino acids

Sequence
(BLAST)

001: MSTPTPVTAL APSNATNSPP PSTPATTPPP ASPTPPATAP PPASPTPPAT APPPSTPAQA PPPARTPTPP AATPPPDASA SPPPPTTPAP SSNPPPSTTP
101: APSGSPSPPS TTPSTPSPPA RGNSPPSPSG GSPSPPSGGR PSPPAVSSPP SDEGSSGIST GVVVGIAIGG VLILAILSLL FIFCKKKKRR NHEPVNYYVP
201: PPPPPLGVKA DPHGGQMHHW QQNAPPSADH FVAMPPKPSP PPVGGLLPSH APPRAPSPQP QPYMNSSGAS SNYSGSEIAL PPPSPPMSLG FSQSTFTYEE
301: LVRATDGFSD ANLLGQGGFG YVHKGILPNG KEVAVKQLKA GSGQGEREFQ AEVEIISRVH HKHLVSLVGY CITGAQRLLV YEFVPNNTLE FHLHGKGRPP
401: LDWPIRLKIA LGSAKGLAYL HEDCQPKIIH RDIKAANILV DFNFEAKVAD FGLAKLTSDV NTHVSTRVMG TFGYLAPEYA SSGKLTEKSD VFSFGVMLLE
501: LITGRRPVDS TQSYIEDSLV DWARPLLTRA LEDEKFDGLV DRRLENDYNH NEMARMVACC AACVRHSAKR RPRMTQVLRA LEGDVSLSDL NEGIKPGHST
601: VYSSYTSSDY DTLQYNEDMK KFRKMALATS QEYASSDQYS NPTSEYGLNP SGSSSEGHQT AEMETGRMRK DSRGFSGSKG FSGTS

Best Arabidopsis Sequence Match ( AT4G34440.2 )
(BLAST)

001: MADSPVDSSP APETSNGTPP SNGTSPSNES SPPTPPSSPP PSSISAPPPD ISASFSPPPA PPTQETSPPT SPSSSPPVVA NPSPQTPENP SPPAPEGSTP
101: VTPPAPPQTP SNQSPERPTP PSPGANDDRN RTNGGNNNRD GSTPSPPSSG NRTSGDGGSP SPPRSISPPQ NSGDSDSSSG NHPQANIGLI IGVLVGAGLL
201: LLLAVCICIC CNRKKKKKSP QVNHMHYYNN NPYGGAPSGN GGYYKGTPQD HVVNMAGQGG GNWGPQQPVS GPHSDASNLT GRTAIPSPQA ATLGHNQSTF
301: TYDELSIATE GFAQSNLLGQ GGFGYVHKGV LPSGKEVAVK SLKLGSGQGE REFQAEVDII SRVHHRHLVS LVGYCISGGQ RLLVYEFIPN NTLEFHLHGK
401: GRPVLDWPTR VKIALGSARG LAYLHEDCHP RIIHRDIKAA NILLDFSFET KVADFGLAKL SQDNYTHVST RVMGTFGYLA PEYASSGKLS DKSDVFSFGV
501: MLLELITGRP PLDLTGEMED SLVDWARPLC LKAAQDGDYN QLADPRLELN YSHQEMVQMA SCAAAAIRHS ARRRPKMSQI VRALEGDMSM DDLSEGTRPG
601: QSTYLSPGSV SSEYDASSYT ADMKKFKKLA LENKEYQSSE YGGTSEYGLN PSASSSEEMN RGSMKRNPQL

Arabidopsis Description

PERK5PERK5 [Source:UniProtKB/TrEMBL;Acc:A0A178V2W8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.