Factsheet for Os01t0121900-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00400	Sorghum	cytosol	23.99	21.65
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	22.3	21.29
TraesCS3B01G028000.1	Wheat	mitochondrion	18.58	20.83
Os01t0122200-01	Rice	cytosol	23.65	20.77
TraesCSU01G043700.1	Wheat	cytosol	21.96	20.57
OQU86430	Sorghum	cytosol, nucleus, plastid	18.24	20.45
TraesCS3A01G029400.1	Wheat	cytosol, nucleus, peroxisome	20.95	20.26
TraesCS3B01G054000.1	Wheat	cytosol	20.27	19.17
TraesCS3A01G029300.1	Wheat	nucleus, peroxisome, plasma membrane, plastid	21.96	18.62
KXG32025	Sorghum	cytosol	18.24	17.31
Os01t0121950-00	Rice	cytosol, endoplasmic reticulum, nucleus	20.95	16.89
Os01t0122701-00	Rice	plastid	5.74	16.83

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	EntrezGene:9268150	UniProt:A0A0P0UY32	ProteinID:BAS70141.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0046872	GO:GO:0061630	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083
EnsemblPlantsGene:Os01g0121900	EnsemblPlants:Os01t0121900-00	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF35
InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI0003939EB3	RefSeq:XP_015636221.1	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

Seven-in-absentia protein, sina domain containing protein. (Os01t0121900-00)

Coordinates

chr1:+:1238623..1240005

Molecular Weight (calculated)

32651.2 Da

IEP (calculated)

6.496

GRAVY (calculated)

-0.300

Length

296 amino acids

Sequence
(BLAST)

001: MAVLQMAREK RSCPRASETQ QNNSEKKGKV DGESAARDKR AITVTVDPEV LECDVCFGPL TPPLYQCMRR GHITCSTCVA EMGQECQWCR APEATTTRCR
101: AMEHFLAALA VPCSFNHKGC AAMVPYGERE AHEAACAHSP CYCPIRGCSS SPYSGVSLVE HLERKHPEIG RTRVDRTTLS PLRMCHGEPA RLVYLAGDDR
201: DRAVFLLAVD RSEAPRGWSL WMVRLKAEEE EEEDKGELRY KIMVAANGGV LSLVGETESV GRLTAPYRAS SFLFVPGAML DAPPEAEGLL VFVELK

Best Arabidopsis Sequence Match ( AT5G37890.1 )
(BLAST)

001: MVGAAILESP GEGIGSNSIL SQKRQLSSSD AAKRDAKKRS TMLMDLEILD CPICYEAFTI PIFQCDNGHL ACSSCCPKLN NKCPACTSPV GHNRCRAMES
101: VLESILIPCP NAKLGCKKNV SYGKELTHEK ECMFSHCACP ALDCNYTSSY KDLYTHYRIT HMEINQINTF ICDIPLSVRM NISKKILIRT EHLTNHLFAV
201: QCFREPYGVY VTVSCIAPSS PELSQYSYAL SYTVDGHTVI YQSPEVKRVL KLSFQTPQEN FMLIPNSLLR GDVLEMRISV KKLNKE

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.