CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32025	Sorghum	cytosol	44.7	37.82
EES00400	Sorghum	cytosol	42.05	33.84
EES00397	Sorghum	plastid	40.53	33.23
TraesCS3B01G028000.1	Wheat	mitochondrion	28.79	28.79
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	33.71	28.71
TraesCS3B01G054000.1	Wheat	cytosol	33.71	28.43
EES02585	Sorghum	cytosol, nucleus, plastid	33.33	27.08
TraesCSU01G043700.1	Wheat	cytosol	32.2	26.9
TraesCS3A01G029400.1	Wheat	cytosol, nucleus, peroxisome	31.06	26.8
EES00395	Sorghum	cytosol, nucleus, plastid	32.2	24.85
TraesCS3A01G029300.1	Wheat	nucleus, peroxisome, plasma membrane, plastid	32.58	24.64
KXG32022	Sorghum	nucleus	30.3	23.74
OQU86433	Sorghum	cytosol, nucleus, plastid	30.68	22.69
OQU88982	Sorghum	plastid	20.45	21.43
OQU86440	Sorghum	nucleus, plasma membrane, plastid	26.52	20.83
KXG32016	Sorghum	cytosol	25.0	20.5
Os01t0121900-00	Rice	cytosol	20.45	18.24

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	InterPro:7-in-absentia-prot_TRAF-dom	UniProt:A0A1W0VWD1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	InterPro:IPR008974	InterPro:IPR013010
InterPro:IPR013083	EnsemblPlants:OQU86430	ProteinID:OQU86430	ProteinID:OQU86430.1	PFAM:PF03145	PFscan:PS51081
PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like	EnsemblPlantsGene:SORBI_3003G090500	SUPFAM:SSF49599	InterPro:TRAF-like
UniParc:UPI0009DC83AB	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:7880297..7881203

Molecular Weight (calculated)

28534.8 Da

IEP (calculated)

8.287

GRAVY (calculated)

-0.119

Length

264 amino acids

Sequence
(BLAST)

001: METGEQKDSK KARVDPPPAP LVPHCMVSID MAKLQCPVCT HPLKPPIFQL ADKDRCYSCA NPGGYSRNLP LEDVVRSTKV WCPNSPYGCN SPMMILHEMD
101: DHQRKCPHAP CRCPEPGCAF VSSAAWFGYH LMVTHSWPVN SIGYGKACQL QLPESKPRCL LAAMEDGRLF VVSVAALRDS VSLVCLRANA AAGPHYTCKM
201: WATGSAAAAS GKVPTVSVEM EVPSSAVATG MEAKVAAALA VPRKMLHGPS KELHLNVRID KVQT

Best Arabidopsis Sequence Match ( AT1G66650.1 )
(BLAST)

001: MTKLGRRNDG GGKSHRSSTK RQRRTSVSVD DPSPGEEEEK TLVVLTDDSD SEEDDKPLGD VLRTCRKRRV SSPKSVTLPN SNVLECPNCF DPLKKPIFQC
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.