Factsheet for TraesCS3A01G029400.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	81.7	80.65
TraesCSU01G043700.1	Wheat	cytosol	77.78	75.32
TraesCS3B01G054000.1	Wheat	cytosol	76.8	75.08
TraesCS3B01G028000.1	Wheat	mitochondrion	63.73	73.86
TraesCS3A01G029300.1	Wheat	nucleus, peroxisome, plasma membrane, plastid	77.12	67.62
KXG32025	Sorghum	cytosol	37.58	36.86
EES00400	Sorghum	cytosol	33.99	31.71
OQU86430	Sorghum	cytosol, nucleus, plastid	26.8	31.06
TraesCS3A01G065700.1	Wheat	cytosol, nucleus, plastid	32.35	29.91
TraesCS5A01G435500.1	Wheat	cytosol, nucleus, plastid	28.76	29.73
TraesCS3A01G029500.1	Wheat	cytosol, nucleus, peroxisome	31.37	29.09
TraesCS3A01G065800.1	Wheat	cytosol	18.63	29.08
TraesCS3A01G030000.1	Wheat	nucleus, plasma membrane, plastid	31.05	28.7
TraesCS3A01G065900.1	Wheat	cytosol	20.91	27.95
TraesCS7A01G138000.1	Wheat	nucleus	28.1	27.22
TraesCS3A01G031400.1	Wheat	cytosol, nucleus, peroxisome	28.76	26.83
TraesCS3A01G028800.1	Wheat	cytosol, nucleus, plastid	27.78	26.56
TraesCS7A01G451200.1	Wheat	cytosol, nucleus, plastid	26.47	25.55
TraesCS3A01G021100.2	Wheat	cytosol, nucleus, plastid	18.3	25.23
TraesCS6A01G343600.1	Wheat	plastid	26.8	23.63
TraesCS3A01G505400.1	Wheat	cytosol	26.14	22.28
TraesCS3A01G028900.1	Wheat	cytosol, nucleus, plastid	25.49	22.1
Os01t0121900-00	Rice	cytosol	20.26	20.95
TraesCS3A01G020900.1	Wheat	cytosol	19.61	20.13
TraesCS2A01G361500.1	Wheat	cytosol	19.61	18.99
TraesCS3A01G505500.1	Wheat	cytosol	18.63	17.87
TraesCS4A01G201600.1	Wheat	cytosol, nucleus, peroxisome	27.45	16.47
TraesCS3A01G028000.1	Wheat	plasma membrane	28.43	13.41
TraesCS3A01G028600.1	Wheat	plastid	27.45	12.14
TraesCS3A01G028500.1	Wheat	plastid	28.76	8.53

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3A01G029400	EnsemblPlants:TraesCS3A01G029400.1	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3A:-:15569596..15571006

Molecular Weight (calculated)

32523.9 Da

IEP (calculated)

5.218

GRAVY (calculated)

-0.089

Length

306 amino acids

Sequence
(BLAST)

001: MGRGGKKPRV ESPAADVTLD DDVQEVKEED ETGAMAVVAA GSAAAPRVEI LVEFDKSLLD CPLCSLPLKP PVFLCPAKHA ACGPCAANLA SKCPACDGAY
101: ERDEGAYGYL LAVRVPCPNQ AYGCGSSVVY CMAGDHRLVC PHAPCRCPET GCGFLGAPPA LRVHLAERHA WPVTNIAYGS VLEVQMQPAE QGQRLLAAED
201: GEQLFLLVAS ERGVKVVRVT VAADEDGPSA SWYRCKVWVH APVDTDTGHM DVLMLDAKVE SCAVPSEEAA FGAGGRYLPV PPDMPSDIRL RIDKQVKASR
301: SPRSRA

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.